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Report for CCDS57014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57014.1 Public Mus musculus 15 Hoxc10 23 108 98 CCDS HistoryNCBI Gene:209448Re-query CCDS DB by CCDS ID:57014.1Re-query CCDS DB by GeneID:209448See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001699.7 ENSMUSP00000001699.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001699.7Link to Ensembl Protein Viewer:ENSMUSP00000001699.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001699Re-query CCDS DB by Protein ID:ENSMUSP00000001699
Original member Current member NCBI NM_010462.5 NP_034592.2 Accepted alive Link to Nucleotide Sequence:NM_010462.5Link to Protein Sequence:NP_034592.2Re-query CCDS DB by Nucleotide ID:NM_010462Re-query CCDS DB by Protein ID:NP_034592Link to BLAST:NP_034592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034592.2 342 P31257 342 100% 0 0

Chromosomal Locations for CCDS 57014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102966858 102967608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102970798 102971075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGACATGCCCTCGCAATGTAACTCCGAACTCGTACGCGGAGCCCTTGGCTGCGCCGGGAGGAGGAGAGC
GCTATAACCGTAACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAGGGGCTG
CGGGCTCGCGCCCTCTCTCTCCAAGAGGGACGAGGGAGGCAGCCCAAACCTAGCCCTCAACACCTACCCG
TCCTACCTCTCGCAGCTGGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCA
GGCCTCTGTCCTCCTGTTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGTGCAGA
GAAGCGGGCGAAAAGTGGCCCTGAGGCAGCTCTCTACTCCCACCCCCTGCCGGAGTCTTGCCTTGGGGAG
CACGAGGTACCTGTACCCAGCTACTACCGAGCCAGCCCGAGCTACTCCGCGCTGGACAAAACGCCCCACT
GTGCTGGGGCCAACGAGTTCGAAGCCCCCTTTGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAACATCT
GGAATCGCCTCAGCTTGGGGGCAAAGTGAGTTTTCCTGAGACCCCCAAGTCCGACAGCCAGACCCCCAGT
CCCAATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCAAAAGCCAGCCCCTCGGAGAGCGAGAAGGAAC
GGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGAAGCTAAAGAGGAGATAAAGGCAGAAAA
CACCACAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAAGAAGAGGTGCCCCTATACTAAACACCAGACG
CTGGAATTGGAGAAAGAATTTCTGTTCAATATGTATTTGACGCGAGAGCGCCGCCTGGAGATTAGCAAGA
CCATTAACCTTACAGACAGACAAGTCAAAATCTGGTTTCAAAATCGCAGAATGAAACTCAAGAAAATGAA
CCGAGAGAATCGGATCCGGGAACTGACCTCCAATTTTAATTTCACCTGA

Translation (342 aa):
MTCPRNVTPNSYAEPLAAPGGGERYNRNAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGGSPNLALNTYP
SYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGE
HEVPVPSYYRASPSYSALDKTPHCAGANEFEAPFEQRASLNPRTEHLESPQLGGKVSFPETPKSDSQTPS
PNEIKTEQSLAGPKASPSESEKERAKTADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQT
LELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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