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Report for CCDS5699.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5699.2 Public Homo sapiens 7 FBXO24 24 110 108 CCDS HistoryNCBI Gene:26261Re-query CCDS DB by CCDS ID:5699.2Re-query CCDS DB by GeneID:26261See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5699.1
The coding region has been updated to represent an alternative transcript variant that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5699.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427939.2 ENSP00000416558.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427939.2Link to Ensembl Protein Viewer:ENSP00000416558.2Re-query CCDS DB by Nucleotide ID:ENST00000427939Re-query CCDS DB by Protein ID:ENSP00000416558
Original member Current member NCBI NM_012172.5 NP_036304.2 Accepted alive Link to Nucleotide Sequence:NM_012172.5Link to Protein Sequence:NP_036304.2Re-query CCDS DB by Nucleotide ID:NM_012172Re-query CCDS DB by Protein ID:NP_036304Link to BLAST:NP_036304.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036304.2 618 O75426-3 618 100% 0 0

Chromosomal Locations for CCDS 5699.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100589641 100589793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100589977 100590075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100590174 100590357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100591667 100591902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100592783 100593017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100594383 100594541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100595102 100595223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100595575 100595706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100600031 100600201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100600534 100600899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGTGTGGGAAAGCCAGCAGGAACGGGGGGGCCAAGGGCCTAGGAGACAGGAGGGCAGGAGCAGGGAGG
GGGCAATCAGGATGGTCAGGGGAAGCCAGAGACGGAAGCTGCAAAAATTCACCAGGCTGTGTGGACGGGA
GGAGGGGCTCCGGGTGAAGAGAAGCTGCCCTTCTTGTGGCTCGGAGCTTGGGGTTGAAGAGAAGAGGGGG
AAAGGAAATCCGATTTCCATCCAGTTGTTCCCCCCAGAGCTGGTGGAGCATATCATCTCATTCCTCCCAG
TCAGAGACCTTGTTGCCCTCGGCCAGACCTGCCGCTACTTCCACGAAGTGTGCGATGGGGAAGGCGTGTG
GAGACGCATCTGTCGCAGACTCAGTCCGCGCCTCCAAGATCAGGGTTCTGGAGTCCGGCCCTGGAAGAGA
GCTGCCATTCTGAACTACACGAAGGGCCTGTATTTCCAGGCATTTGGAGGCCGCCGCCGATGTCTCAGCA
AGAGCGTGGCCCCCTTGCTAGCCCACGGCTACCGCCGCTTCTTGCCCACCAAGGATCACGTCTTCATTCT
TGACTACGTGGGGACCCTCTTCTTCCTCAAAAATGCCCTGGTCTCCACCCTCGGCCAGATGCAGTGGAAG
CGGGCCTGTCGCTATGTTGTGTTGTGTCGTGGAGCCAAGGATTTTGCCTCGGACCCAAGGTGTGACACAG
TTTACCGTAAATACCTCTACGTCTTGGCCACTCGGGAGCCGCAGGAAGTGGTGGGTACCACCAGCAGCCG
GGCCTGTGACTGTGTTGAGGTCTATCTGCAGTCTAGTGGGCAGCGGGTCTTCAAGATGACATTCCACCAC
TCAATGACCTTCAAGCAGATCGTGCTGGTTGGTCAGGAGACCCAGCGGGCTCTACTGCTCCTCACAGAGG
AAGGAAAGATCTACTCTTTGGTAGTGAATGAGACCCAGCTTGACCAGCCACGCTCCTACACGGTTCAGCT
GGCCCTGAGGAAGGTGTCCCACTACCTGCCTCACCTGCGCGTGGCCTGCATGACTTCCAACCAGAGCAGC
ACCCTCTACGTCACAGACCAGGGGGGAGTGTATTTTGAGGTGCATACCCCAGGGGTGTATCGCGATCTCT
TTGGGACCCTTCAAGCCTTTGACCCCCTGGACCAGCAGATGCCGCTTGCTCTCTCACTGCCTGCCAAGAT
CCTATTCTGTGCTCTTGGCTACAACCACCTTGGCCTGGTGGATGAATTTGGCCGAATCTTCATGCAAGGA
AATAACAGATACGGGCAGCTAGGAACAGGGGACAAAATGGACCGAGGGGAACCCACACAGGTTTGTTACC
TGCAGCGGCCCATCACCCTGTGGTGCGGCCTCAACCACTCCCTGGTGCTGAGCCAGAGCTCAGAGTTCAG
CAAGGAGCTGCTGGGCTGCGGCTGTGGGGCTGGGGGCCGCCTCCCAGGCTGGCCCAAGGGGAGTGCCTCC
TTCGTCAAGCTCCAAGTCAAGGTCCCTCTGTGTGCCTGTGCCCTCTGTGCCACCAGGGAGTGCCTATACA
TCCTGTCCAGCCACGACATTGAGCAGCACGCCCCCTATCGCCACCTGCCAGCCAGCAGGGTGGTGGGGAC
TCCTGAGCCCAGCCTGGGGGCCAGAGCACCCCAGGACCCCGGGGGGATGGCCCAGGCCTGCGAGGAGTAC
CTCAGCCAGATCCACAGTTGCCAAACGTTGCAGGACCGCACGGAGAAGATGAAGGAGATCGTAGGGTGGA
TGCCCCTGATGGCCGCACAGAAGGACTTCTTCTGGGAGGCCCTGGACATGCTGCAGAGGGCTGAAGGAGG
CGGGGGTGGTGTAGGGCCCCCAGCCCCTGAGACCTAA

Translation (618 aa):
MVWESQQERGGQGPRRQEGRSREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRG
KGNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWK
RACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHH
SMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSS
TLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQG
NNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSAS
FVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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