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Report for CCDS56602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56602.1 Public Homo sapiens X MAGED4B 24 110 108 CCDS HistoryNCBI Gene:81557Re-query CCDS DB by CCDS ID:56602.1Re-query CCDS DB by GeneID:81557See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485287.5 ENSP00000421861.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485287.5Link to Ensembl Protein Viewer:ENSP00000421861.1Re-query CCDS DB by Nucleotide ID:ENST00000485287Re-query CCDS DB by Protein ID:ENSP00000421861
Original member Current member NCBI NM_001242362.2 NP_001229291.1 Accepted alive Link to Nucleotide Sequence:NM_001242362.2Link to Protein Sequence:NP_001229291.1Re-query CCDS DB by Nucleotide ID:NM_001242362Re-query CCDS DB by Protein ID:NP_001229291Link to BLAST:NP_001229291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229291.1 757 Q96JG8-4 757 100% 0 0

Chromosomal Locations for CCDS 56602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52062029 52062038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52062234 52062664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52062987 52063101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52063703 52063750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52064047 52064109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52064501 52064543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52064629 52064708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52065330 52065421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52065810 52065889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52066083 52066146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52066250 52066453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52066865 52067698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52067963 52068172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCTGAGGGAAGCTTCAGCGTGCAATCGGAAAGCTACAGTGTTGAAGACATGGATGAGGGTAGCGACG
AAGTCGGGGAGGAAGAGATGGTTGAAGGCAACGACTATGAAGAATTCGGTGCGTTTGGTGGCTATGGCAC
CCTCACCAGCTTTGACATCCATATCCTCAGAGCCTTCGGAAGCTTGGGTCCAGGCCTTCGCATCTTATCG
AATGAGCCCTGGGAACTGGAAAACCCTGTGCTGGCCCAGACCCTGGTGGAGGCATTGCAGCTGGATCCGG
AAACACTTGCCAATGAGACGGCCGCCCGTGCTGCCAACGTAGCCCGCGCCGCCGCCTCCAACCGTGCGGC
TCGGGCCGCTGCCGCCGCTGCCCGTACCGCCTTCAGTCAGGTGGTCGCTAGCCACCGGGTGGCCACGCCG
CAGGTCTCAGGAGAGGATACCCAGCCCACGACCTACGCCGCCGAGGCTCAGGGGCCCACCCCTGAGCCAC
CCCTTGCTTCTCCGCAGACCTCCCAGATGTTAGTCACCAGTAAGATGGCTGCCCCCGAGGCTCCGGCAAC
CTCCGCACAGTCCCAGACAGGCTCCCCGGCCCAGGAGGCTGCTACTGAGGGCCCTAGTAGCGCCTGTGCT
TTCTCTCAGGCTCCGTGTGCCAGGGAGGTGGACGCCAACCGGCCCAGCACAGCCTTCCTGGGCCAGAATG
ATGTCTTCGATTTCACTCAGCCGGCAGGTGTCAGTGGCATGGCCTTCCCGCGCCCCAAGAGACCTGCCCC
AGCCCAAGAGGCTGCCACAGAGGGCCCCAGTGCTGCCTCTGGTGTGCCCCAGACGGGACCTGGCAGGGAG
GTGGCAGCCACCCGGCCCAAGACCACCAAGTCGGGGAAGGCGCTGGCCAAGACTCGGTGGGTGGAGCCTC
AGAATGTTGTGGCAGCAGCTGCTGCCAAGGCCAAGATGGCCACGAGCATCCCTGAGCCGGAGGGTGCAGC
TGCTGCCACTGCTCAGCACAGTGCTGAGCCCTGGGCCAGGATGGGAGGCAAGAGGACCAAGAAGTCCAAG
CACCTGGATGATGAGTATGAGAGCAGCGAGGAGGAGAGAGAGACTCCCGCGGTCCCACCCACCTGGAGAG
CATCACAGCCCTCATTGACGGTGCGGGCTCAGTTGGCCCCTCGGCCCCCGATGGCCCCGAGGTCCCAGAT
ACCCTCAAGGCACGTACTGTGCCTGCCCCCCCGCAACGTGACCCTTCTGCAGGAGAGGGCAAATAAGTTG
GTGAAATACCTGATGATTAAGGACTACAAGAAGATCCCCATCAAGCGCGCAGACATGCTGAAGGATGTCA
TCAGAGAATATGATGAACATTTCCCTGAGATCATTGAACGAGCAACGTACACCCTGGAAAAGAAGTTTGG
GATCCACCTGAAGGAGATCGACAAGGAAGAACACCTGTATATTCTTGTCTGCACACGGGACTCCTCAGCT
CGCCTCCTTGGAAAAACCAAGGACACTCCCAGGCTGAGTCTCCTCTTGGTGATTCTGGGCGTCATCTTCA
TGAATGGCAACCGTGCCAGCGAGGCTGTCCTCTGGGAGGCACTACGCAAGATGGGACTGCGCCCTGGGGT
GAGGCACCCATTCCTCGGCGATCTGAGGAAGCTCATCACAGATGACTTTGTGAAGCAGAAGAACCCGGAG
CTCAGAGAGGAGACGCCTCTGAGCATGGCTCCCAGCTGGTACCTGGAATACAAGAAGATCCCCAACAGCA
ACCCACCTGAGTATGAATTCCTCTGGGGCCTGCGAGCCCGCCATGAGACCAGCAAGATGAGGGTCCTGAG
ATTCATCGCCCAGAATCAGAACCGAGACCCCCGGGAATGGAAGGCTCATTTCTTGGAGGCTGTGGATGAT
GCTTTCAAGACAATGGATGTGGATATGGCCGAGGAACATGCCAGGGCCCAGATGAGGGCCCAGATGAATA
TCGGGGATGAAGCGCTGATTGGACGGTGGAGCTGGGATGACATACAAGTCGAGCTCCTGACCTGGGATGA
GGACGGAGATTTTGGCGATGCCTGGGCCAGGATCCCCTTTGCTTTCTGGGCCAGATACCATCAGTACATT
CTGAATAGCAACCGTGCCAACAGGAGGGCCACGTGGAGAGCTGGCGTCAGCAGTGGCACCAATGGAGGGG
CCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGACCAGAAATGCTGCCAGAGCTGG
CGCCAGCTTCTTCTCCTGGATCCAGCACCGTTGA

Translation (757 aa):
MAEGSFSVQSESYSVEDMDEGSDEVGEEEMVEGNDYEEFGAFGGYGTLTSFDIHILRAFGSLGPGLRILS
NEPWELENPVLAQTLVEALQLDPETLANETAARAANVARAAASNRAARAAAAAARTAFSQVVASHRVATP
QVSGEDTQPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACA
FSQAPCAREVDANRPSTAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAATEGPSAASGVPQTGPGRE
VAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPEGAAAATAQHSAEPWARMGGKRTKKSK
HLDDEYESSEEERETPAVPPTWRASQPSLTVRAQLAPRPPMAPRSQIPSRHVLCLPPRNVTLLQERANKL
VKYLMIKDYKKIPIKRADMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSA
RLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITDDFVKQKNPE
LREETPLSMAPSWYLEYKKIPNSNPPEYEFLWGLRARHETSKMRVLRFIAQNQNRDPREWKAHFLEAVDD
AFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWARIPFAFWARYHQYI
LNSNRANRRATWRAGVSSGTNGGASTSVLDGPSTSSTIRTRNAARAGASFFSWIQHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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