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Report for CCDS55926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55926.1 Public Homo sapiens 14 DCAF4 24 110 108 CCDS HistoryNCBI Gene:26094Re-query CCDS DB by CCDS ID:55926.1Re-query CCDS DB by GeneID:26094See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000555042.5 ENSP00000452131.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555042.5Link to Ensembl Protein Viewer:ENSP00000452131.1Re-query CCDS DB by Nucleotide ID:ENST00000555042Re-query CCDS DB by Protein ID:ENSP00000452131
Original member Current member NCBI NM_001163508.2 NP_001156980.1 Accepted alive Link to Nucleotide Sequence:NM_001163508.2Link to Protein Sequence:NP_001156980.1Re-query CCDS DB by Nucleotide ID:NM_001163508Re-query CCDS DB by Protein ID:NP_001156980Link to BLAST:NP_001156980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156980.1 489 Q8WV16-5 489 100% 0 0

Chromosomal Locations for CCDS 55926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 72937979 72938070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72939802 72939902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72940220 72940377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72941745 72941824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72942994 72943096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72945884 72946027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72947142 72947191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72951798 72951877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72954161 72954262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72954386 72954462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72955523 72955696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72956386 72956500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72958612 72958805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGAATAAAAGTCGCTGGCAGAGTAGAAGACGACATGGGAGAAGAAGCCACCAGCAGAACCCTTGGTTCA
GACTCCGTGATTCTGAAGACAGGTCTGACTCCCGGGCAGCACAGCCCGCTCACGATTCCGGCCACGGTGA
TGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGACCTCCTCTGTGCCAGAGCTACCTGGGTTTTAC
TTTGACCCTGAAAAGAAACGCTACTTCCGCTTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAG
AGAGCATCCGGCAGAAGGAGATGGAGAGCAAGAGACTGCGGCTGCTCCAGGAAGAAGACAGACGGAAAAA
GATTGCCAGGATGGGATTTAATGCATCTTCCATGCTACGAAAAAGCCAGCTGGGTTTTCTCAACGTCACC
AATTACTGCCATTTAGCCCACGAGCTGCGTCTCAGCTGCATGGAGAGGAAAAAGGTCCAGATTCGAAGCA
TGGATCCCTCCGCCTTGGCAAGCGACCGATTTAACCTCATACTGGCAGATACCAACAGTGACCGGCTCTT
CACAGTGAACGATGTTAAAGTTGGAGGCTCCAAGTATGGTATCATCAACCTGCAAAGTCTGAAGACCCCT
ACGCTCAAGGTGTTCATGCACGAAAACCTCTACTTCACCAACCGGAAGGTGAATTCGGTGTGCTGGGCCT
CGCTGAATCACTTGGATTCCCACATTCTGCTATGCCTCATGGGACTCGCAGAGACTCCAGGCTGTGCCAC
CCTGCTCCCAGCATCACTGTTCGTCAATAGTCACCCAGCAGGAATAGACCGGCCTGGCATGCTCTGCAGT
TTCCGGATCCCTGGTGCCTGGTCCTGTGCCTGGTCCCTGAATATCCAAGCAAATAACTGCTTCAGTACAG
GCTTGTCTCGGCGGGTCCTGTTGACCAACGTGGTGACGGGACACCGGCAGTCCTTTGGGACCAACAGTGA
TGTCTTGGCTCCTCTGCTGTTTAATGGCTGCCGCTCTGGGGAAATCTTTGCCATTGATCTGCGTTGTGGA
AATCAAGGCAAGGGATGGAAGGCCACCCGCCTGTTTCATGATTCAGCAGTGACCTCTGTGCGGATCCTCC
AAGATGAGCAATACCTGATGGCTTCAGACATGGCTGGAAAGATCAAGCTGTGGGACCTGAGGACCACGAA
GTGCGTAAGGCAGTACGAAGGCCACGTGAATGAGTACGCCTACCTGCCCCTGCATGTGCACGAGGAAGAA
GGAATCCTGGTGGCAGTGGGCCAGGACTGCTACACGAGAATCTGGAGCCTCCACGATGCCCGCCTACTGA
GAACCATACCCTCCCCGTACCCTGCCTCCAAGGCCGACATTCCCAGTGTGGCCTTCTCGTCGCGGCTGGG
GGGCTCCCGGGGCGCGCCGGGGCTGCTCATGGCTGTCGGGCAGGACCTTTACTGTTACTCCTACAGCTAA

Translation (489 aa):
MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGTSSVPELPGFY
FDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLRKSQLGFLNVT
NYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILADTNSDRLFTVNDVKVGGSKYGIINLQSLKTP
TLKVFMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCS
FRIPGAWSCAWSLNIQANNCFSTGLSRRVLLTNVVTGHRQSFGTNSDVLAPLLFNGCRSGEIFAIDLRCG
NQGKGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPLHVHEEE
GILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPGLLMAVGQDLYCYSYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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