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Report for CCDS55466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55466.1 Public Homo sapiens X TAF7L 24 110 108 CCDS HistoryNCBI Gene:54457Re-query CCDS DB by CCDS ID:55466.1Re-query CCDS DB by GeneID:54457See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55466.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356784.2 ENSP00000349235.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356784.2Link to Ensembl Protein Viewer:ENSP00000349235.1Re-query CCDS DB by Nucleotide ID:ENST00000356784Re-query CCDS DB by Protein ID:ENSP00000349235
Original member Current member NCBI NM_001168474.2 NP_001161946.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168474.2Link to Protein Sequence:NP_001161946.1Re-query CCDS DB by Nucleotide ID:NM_001168474Re-query CCDS DB by Protein ID:NP_001161946Link to BLAST:NP_001161946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161946.1 376 Q5H9L4-2 376 100% 0 0

Chromosomal Locations for CCDS 55466.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101269193 101269237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101275222 101275281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101276000 101276112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101276307 101276528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101277606 101277719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101278049 101278121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101278994 101279035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101281720 101281775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101282327 101282453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101283450 101283583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101286575 101286653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101287478 101287543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAGTGAAAGCCAGGATGAAGTTCCTGATGAAGTTGAGAACCAGTTTATATTGCGTCTGCCTCTGGAAC
ATGCTTGTACTGTCAGGAACCTAGCACGTTCTCAAAGTGTCAAGATGAAGGATAAACTAAAAATTGACTT
ATTGCCTGATGGGCGCCATGCAGTTGTTGAAGTAGAAGATGTCCCACTAGCTGCTAAGCTGGTTGACTTG
CCTTGTGTTATTGAAAGCCTGAGAACGCTTGATAAAAAAACCTTTTATAAAACAGCAGACATTTCTCAGA
TGCTTGTGTGCACTGCTGATGGTGATATCCACCTTTCTCCAGAAGAACCAGCTGCCTCTACTGATCCTAA
TATAGTCAGGAAAAAAGAAAGGGGGAGAGAAGAAAAATGTGTCTGGAAGCATGGCATTACGCCACCACTT
AAGAATGTCAGAAAGAAAAGGTTCCGGAAAACACAAAAAAAGGTCCCTGATGTCAAAGAAATGGAAAAAA
GCAGCTTTACTGAGTACATTGAATCTCCAGACGTGGAAAATGAAGTAAAGAGACTGCTGCGTTCGGATGC
TGAAGCCGTAAGTACCCGTTGGGAAGTCATTGCTGAAGATGGAACCAAGGAAATAGAAAGTCAAGGCTCC
ATCCCAGGATTTTTGATATCCTCGGGAATGAGCAGCCACAAGCAGGGTCATACCTCGTCAGAATATGATA
TGCTTCGGGAGATGTTCAGTGATTCTAGAAGTAACAATGATGATGATGAGGATGAGGATGATGAAGATGA
GGATGAGGATGAGGATGAGGATGAAGATGAAGACAAAGAAGAGGAGGAGGAAGATTGTTCTGAAGAGTAT
CTGGAAAGGCAGCTGCAGGCCGAGTTTATTGAATCTGGCCAGTATAGGGCAAATGAAGGTACCAGTTCAA
TAGTCATGGAAATTCAGAAGCAGATTGAGAAAAAGGAGAAAAAGCTCCATAAGATTCAGAATAAAGCACA
AAGACAGAAGGATCTCATCATGAAAGTGGAAAACCTGACACTCAAGAATCATTTTCAGTCTGTGCTGGAG
CAGCTTGAGTTACAGGAAAAACAAAAAAATGAGAAGCTCATTTCCCTACAGGAACAGTTGCAGCGTTTTC
TGAAGAAGTGA

Translation (376 aa):
MSESQDEVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDL
PCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPL
KNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS
IPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEEY
LERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIMKVENLTLKNHFQSVLE
QLELQEKQKNEKLISLQEQLQRFLKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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