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Report for CCDS55332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55332.1 Public Homo sapiens 9 PTBP3 24 110 108 CCDS HistoryNCBI Gene:9991Re-query CCDS DB by CCDS ID:55332.1Re-query CCDS DB by GeneID:9991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374257.6 ENSP00000363375.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374257.6Link to Ensembl Protein Viewer:ENSP00000363375.1Re-query CCDS DB by Nucleotide ID:ENST00000374257Re-query CCDS DB by Protein ID:ENSP00000363375
Original member Current member NCBI NM_001163788.4 NP_001157260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163788.4Link to Protein Sequence:NP_001157260.1Re-query CCDS DB by Nucleotide ID:NM_001163788Re-query CCDS DB by Protein ID:NP_001157260Link to BLAST:NP_001157260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157260.1 524 O95758-6 524 100% 0 0

Chromosomal Locations for CCDS 55332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112223851 112223983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112224133 112224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112227411 112227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112228380 112228472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112231380 112231413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112232099 112232238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112234820 112234897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112250929 112251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112252678 112252788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112262435 112262599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112268049 112268195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112275844 112276013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112297832 112297865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAATAGTTCTACTCCTTCTACAGGTGTGTATGCTAATGGGAATGACAGCAAGAAATTTAAACGAGATA
GACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCATGTGATGTCACCGAAGCAGAGAT
CATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGTTGAAAGGAAAAAGCCAGGCTTTC
TTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTACACTCCTATTACTCCTCACCTTC
GAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGAGAACTTAAGACTGACAATCTACCTAATCAAGC
TCGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCCAATCAGGAAGCCTGGCCCTTTCTGGAGGTCCT
TCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGTGCTTCGAATAATTATTGAAAACCTCTTTTACC
CTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAATTTGGCACAGTCTTGAAGATTATCACCTTTAC
AAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTAAATGCACATTATGCCAAAATGGCT
CTGGATGGCCAGAATATCTATAATGCATGCTGCACTCTGCGCATTGACTTCTCCAAGCTCACCAGCCTTA
ATGTGAAATATAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACTGGTGATGGCCAGCC
ATCCCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAATTTCTTCACCATATGCAGGGGCT
GCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTACAGGTCTATCAGTTCCAGCTGTTCCTGGAGCTC
TTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGAAGGATGGCCATTCCTGGGGCTAGTGGTATACC
AGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTGATCTTATCACACCACATGGGCTTTTTATCCTA
TTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAGAAAGAAAATGCCTTGGTTCAGA
TGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCATCTAAGTGGTCAGAGACTTTATGGGAAAGTGCT
TCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACT
AAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTC
CACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCTTCTGTTACAGTGGATGATCTGAAGAACCTTTT
CATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAAGATCGCAAAATGGCGCTCATTCAA
TTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGAGCTTCATAACCATGACCTTGGAGAAAATCACC
ACCTCAGAGTTTCCTTCTCAAAATCTACAATCTGA

Translation (524 aa):
MNSSTPSTGVYANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAF
LEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGP
SNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGA
AGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFIL
FGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT
KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQ
LGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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