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Report for CCDS54652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54652.1 Public Homo sapiens 3 ZIC4 24 110 108 CCDS HistoryNCBI Gene:84107Re-query CCDS DB by CCDS ID:54652.1Re-query CCDS DB by GeneID:84107See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525172.6 ENSP00000435509.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525172.6Link to Ensembl Protein Viewer:ENSP00000435509.2Re-query CCDS DB by Nucleotide ID:ENST00000525172Re-query CCDS DB by Protein ID:ENSP00000435509
Original member Current member NCBI NM_001168378.1 NP_001161850.1 Accepted alive Link to Nucleotide Sequence:NM_001168378.1Link to Protein Sequence:NP_001161850.1Re-query CCDS DB by Nucleotide ID:NM_001168378Re-query CCDS DB by Protein ID:NP_001161850Link to BLAST:NP_001161850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161850.1 384 Q8N9L1-3 384 100% 0 0

Chromosomal Locations for CCDS 54652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 147388859 147388859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147390931 147391246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147395852 147396469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147402728 147402812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147403964 147404098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGCCGCCCTTCTGTAGGAATGCAAAGTTAGGCCTCCTTTCTTTCCTGATTTGTGCTGGAAGGAGCTTAT
TACCTTTGGGGAAGAATGCCTTTTGGTTAGAAAGAATTGAAAATAATAATACCCTCTGGGAAAAGGCTCA
AAGTCAGAAAATGAGATACAAGACATCCTTGGTGATGAGGAAACGATTACGGCTTTACCGAAACACTCTT
AAAGAGTCAAGTAGCAGCTCTGGACACCATGGCCCCCAGCTCACCGCCGCCTCCAGCCCCTCGGTGTTCC
CGGGCCTCCACGAGGAGCCTCCCCAGGCCTCCCCCAGCCGTCCTTTGAATGGACTCCTGCGTCTGGGGCT
CCCTGGAGACATGTACGCGCGGCCGGAGCCCTTCCCGCCAGGGCCTGCGGCCCGCAGCGACGCCCTGGCA
GCTGCCGCAGCCCTGCATGGCTACGGGGGCATGAACCTGACGGTGAACCTCGCTGCGCCCCACGGTCCTG
GCGCTTTCTTCCGCTACATGCGCCAGCCCATCAAACAGGAGCTCATCTGCAAGTGGCTGGCGGCCGACGG
CACCGCGACCCCGAGCCTCTGCTCCAAAACTTTCAGCACCATGCACGAGCTGGTCACGCACGTCACCGTG
GAGCACGTCGGCGGCCCGGAACAGGCCAACCACATTTGCTTCTGGGAGGAGTGTCCGCGCCAGGGAAAGC
CCTTCAAAGCCAAATACAAACTTGTAAATCACATCCGCGTGCACACGGGCGAGAAGCCCTTCCCTTGTCC
TTTCCCGGGGTGTGGGAAGGTCTTTGCTAGATCAGAAAATCTCAAAATACACAAACGAACTCACACAGGC
GAGAAGCCCTTCAGATGCGAGTTCGAGGGCTGCGAGCGGCGCTTCGCCAACAGCAGCGACCGTAAGAAGC
ATTCGCACGTGCACACTAGCGACAAGCCATACACGTGCAAGGTGCGGGGCTGCGACAAGTGCTACACGCA
CCCCAGCTCGCTGCGTAAGCACATGAAGGTGCACGGGCGCTCGCCGCCGCCCAGCTCTGGCTACGATTCG
GCTACACCGTCTGCCCTCGTGTCGCCCTCGTCGGACTGCGGCCACAAGTCCCAGGTGGCCTCCTCGGCGG
CGGTGGCGGCGCGTACCGCCGACTTGAGCGAATGA

Translation (384 aa):
MPPFCRNAKLGLLSFLICAGRSLLPLGKNAFWLERIENNNTLWEKAQSQKMRYKTSLVMRKRLRLYRNTL
KESSSSSGHHGPQLTAASSPSVFPGLHEEPPQASPSRPLNGLLRLGLPGDMYARPEPFPPGPAARSDALA
AAAALHGYGGMNLTVNLAAPHGPGAFFRYMRQPIKQELICKWLAADGTATPSLCSKTFSTMHELVTHVTV
EHVGGPEQANHICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTG
EKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPSSGYDS
ATPSALVSPSSDCGHKSQVASSAAVAARTADLSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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