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Report for CCDS53954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53954.1 Public Homo sapiens 15 NOX5 24 110 108 CCDS HistoryNCBI Gene:79400Re-query CCDS DB by CCDS ID:53954.1Re-query CCDS DB by GeneID:79400See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530406.6 ENSP00000432440.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530406.6Link to Ensembl Protein Viewer:ENSP00000432440.2Re-query CCDS DB by Nucleotide ID:ENST00000530406Re-query CCDS DB by Protein ID:ENSP00000432440
Original member Current member NCBI NM_001184779.2 NP_001171708.1 Accepted alive Link to Nucleotide Sequence:NM_001184779.2Link to Protein Sequence:NP_001171708.1Re-query CCDS DB by Nucleotide ID:NM_001184779Re-query CCDS DB by Protein ID:NP_001171708Link to BLAST:NP_001171708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171708.1 737 Q96PH1-3 737 100% 0 0

Chromosomal Locations for CCDS 53954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 69014736 69014785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69026528 69026651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69028215 69028365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69031602 69031812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69033043 69033277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69035354 69035507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69035758 69035936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69037028 69037210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69038857 69038989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69042663 69042805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69046822 69046866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69047413 69047537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69047830 69047911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69048959 69049058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69055334 69055500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69056565 69056696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGAACACATCTGGAGACCCAGCCCAGACGGGCCCTGAAGGCTGTAGAGGCACCATGAGTGCCGAGGAGG
ATGCCAGGTGGCTCCGGTGGGTGACTCAGCAGTTTAAGACCATTGCAGGAGAAGATGGGGAGATCAGCCT
GCAAGAATTCAAAGCAGCTCTGCATGTGAAAGAGTCCTTCTTTGCAGAGCGATTCTTTGCCCTATTTGAC
TCCGATAGAAGTGGCACCATCACCCTCCAGGAGCTGCAGGAGGCACTGACCCTGCTCATCCATGGCAGCC
CCATGGACAAACTCAAATTCCTCTTCCAGGTGTATGACATCGATGGCAGTGGCTCCATTGACCCGGATGA
GCTGCGCACTGTGCTGCAGTCGTGTCTGCGCGAGAGCGCCATCTCGCTGCCTGACGAGAAGCTGGACCAG
CTGACGCTGGCGCTCTTCGAATCGGCCGACGCGGACGGCAACGGGGCCATCACCTTCGAGGAGCTCCGGG
ACGAGCTGCAGCGCTTCCCCGGAGTCATGGAGAACCTGACCATCAGCGCTGCCCACTGGCTGACGGCCCC
CGCCCCCCGCCCACGCCCGCGCCGGCCGCGCCAGCTGACCCGCGCCTACTGGCACAACCACCGCAGCCAG
CTGTTCTGCCTGGCCACCTATGCAGGCCTCCACGTGCTGCTCTTCGGGCTGGCGGCCAGCGCGCACCGGG
ACCTCGGCGCCAGCGTCATGGTGGCCAAGGGCTGCGGCCAGTGCCTCAACTTCGACTGCAGCTTCATCGC
GGTGCTGATGCTCAGACGCTGCCTCACCTGGCTGCGGGCCACGTGGCTGGCTCAAGTCCTACCACTGGAC
CAGAACATCCAGTTCCACCAGCTTATGGGCTACGTGGTAGTGGGGCTGTCCCTCGTGCACACCGTGGCTC
ACACTGTGAACTTTGTACTCCAGGCTCAGGCGGAGGCCAGCCCTTTCCAGTTCTGGGAGCTGCTGCTCAC
CACGAGGCCTGGCATTGGCTGGGTACACGGTTCGGCCTCCCCGACAGGTGTCGCTCTGCTGCTGCTGCTC
CTCCTCATGTTCATCTGCTCCAGTTCCTGCATCCGCAGGAGTGGCCACTTTGAGGTGTTCTATTGGACTC
ACCTGTCCTACCTCCTCGTGTGGCTTCTGCTCATCTTTCATGGGCCCAACTTCTGGAAGTGGCTGCTGGT
GCCTGGAATCTTGTTTTTCCTGGAGAAGGCCATCGGACTGGCAGTGTCCCGCATGGCAGCCGTGTGCATC
ATGGAAGTCAACCTCCTCCCCTCCAAGGTCACTCATCTCCTCATCAAGCGGCCCCCTTTTTTTCACTATA
GACCTGGTGACTACTTGTATCTGAACATCCCCACCATTGCTCGCTATGAGTGGCACCCCTTCACCATCAG
CAGTGCTCCTGAGCAGAAAGACACTATCTGGCTGCACATTCGGTCCCAAGGCCAGTGGACAAACAGGCTG
TATGAGTCCTTCAAGGCATCAGACCCACTGGGCCGTGGTTCTAAGAGGCTGTCGAGGAGTGTGACAATGA
GAAAGAGTCAAAGGTCGTCCAAGGGCTCTGAGATACTTTTGGAGAAACACAAATTCTGTAACATCAAGTG
CTACATCGATGGGCCTTATGGGACCCCCACCCGCAGGATCTTTGCCTCTGAGCATGCCGTGCTCATCGGG
GCAGGCATCGGCATCACCCCCTTTGCTTCCATTCTGCAGAGTATCATGTACAGGCACCAGAAAAGAAAGC
ATACTTGCCCCAGCTGCCAGCACTCCTGGATCGAAGGTGTCCAAGACAACATGAAGCTCCATAAGGTGGA
CTTTATCTGGATCAACAGAGACCAGCGGTCTTTCGAGTGGTTTGTGAGCCTGCTGACTAAACTGGAGATG
GACCAGGCCGAGGAGGCTCAATACGGCCGCTTCCTGGAGCTGCATATGTACATGACATCTGCACTGGGCA
AGAATGACATGAAGGCCATTGGCCTGCAGATGGCCCTTGACCTCCTGGCCAACAAGGAGAAGAAAGACTC
CATCACGGGGCTGCAGACGCGCACCCAGCCTGGGCGGCCTGACTGGAGCAAGGTGTTCCAGAAAGTGGCT
GCTGAGAAGAAGGGCAAGGTGCAGGTCTTCTTCTGTGGCTCCCCAGCTCTGGCCAAGGTGCTGAAGGGCC
ATTGTGAGAAGTTCGGCTTCAGATTTTTCCAAGAGAATTTCTAG

Translation (737 aa):
MNTSGDPAQTGPEGCRGTMSAEEDARWLRWVTQQFKTIAGEDGEISLQEFKAALHVKESFFAERFFALFD
SDRSGTITLQELQEALTLLIHGSPMDKLKFLFQVYDIDGSGSIDPDELRTVLQSCLRESAISLPDEKLDQ
LTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHNHRSQ
LFCLATYAGLHVLLFGLAASAHRDLGASVMVAKGCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLD
QNIQFHQLMGYVVVGLSLVHTVAHTVNFVLQAQAEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLL
LLMFICSSSCIRRSGHFEVFYWTHLSYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAAVCI
MEVNLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRL
YESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIG
AGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM
DQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVA
AEKKGKVQVFFCGSPALAKVLKGHCEKFGFRFFQENF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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