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Report for CCDS53492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53492.1 Public Homo sapiens 10 USP6NL 24 110 108 CCDS HistoryNCBI Gene:9712Re-query CCDS DB by CCDS ID:53492.1Re-query CCDS DB by GeneID:9712See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609104.6 ENSP00000476462.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609104.6Link to Ensembl Protein Viewer:ENSP00000476462.1Re-query CCDS DB by Nucleotide ID:ENST00000609104Re-query CCDS DB by Protein ID:ENSP00000476462
Original member Current member NCBI NM_014688.5 NP_055503.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014688.5Link to Protein Sequence:NP_055503.1Re-query CCDS DB by Nucleotide ID:NM_014688Re-query CCDS DB by Protein ID:NP_055503Link to BLAST:NP_055503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055503.1 828 Q92738-1 828 100% 0 0

Chromosomal Locations for CCDS 53492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11462441 11463849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11481770 11481922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11484971 11485070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11485169 11485234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11485817 11485911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11489102 11489222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11490832 11490880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11493119 11493228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11501101 11501208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11509595 11509675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11518535 11518574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11525386 11525468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11527500 11527567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11597631 11597634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACA
GAGGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAG
ATTTGGCTTTTTACATGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGCAAAAGCACCTGGAA
ATTGAAAGAACTACCAAATGGCTGAAAATGCTGAAAGGATGGGAAAAATACAAGAACACTGAAAAGTTTC
ATAGGCGAATTTACAAAGGAATACCACTCCAGCTCAGAGGTGAAGTCTGGGCCCTCCTTCTTGAGATCCC
TAAAATGAAAGAAGAAACAAGGGACCTGTATAGTAAATTAAAACACAGAGCACGGGGCTGTTCACCTGAC
ATCAGACAAATAGACCTGGATGTCAACCGCACATTTCGGGACCACATTATGTTTAGAGACAGATATGGTG
TTAAGCAACAATCCTTATTCCATGTGCTTGCTGCCTATTCTATTTATAACACGGAAGTCGGGTATTGTCA
GGGGATGAGCCAGATCACAGCTTTACTCCTCATGTATATGAACGAGGAAGATGCCTTCTGGGCCCTGGTC
AAACTCTTCTCAGGCCCTAAACATGCCATGCATGGCTTTTTTGTCCAAGGTTTTCCTAAACTCTTGAGGT
TTCAAGAACATCATGAAAAAATACTGAACAAATTTCTGTCCAAGCTTAAGCAACACTTGGATTCTCAAGA
AATCTACACAAGTTTTTACACAATGAAATGGTTTTTTCAGTGTTTCCTTGATCGTACTCCCTTTACACTA
AACCTCAGAATATGGGATATCTACATCTTTGAAGGAGAACGAGTTCTTACTGCTATGTCTTACACCATCT
TAAAATTACACAAAAAACATCTAATGAAATTGTCCATGGAAGAACTTGTAGAATTTTTTCAGGAGACCCT
GGCAAAGGATTTTTTCTTTGAAGATGATTTTGTGATAGAGCAACTTCAGATTTCTATGACAGAACTAAAG
CGGGCAAAGTTAGACCTTCCAGAACCTGGTAAAGAGGATGAATATCCAAAGAAGCCCTTGGGGCAGCTTC
CACCTGAACTTCAGTCTTGGGGCGTCCATCACTTGAGCAACGGACAGAGGAGCGTGGGCCGGCCGAGCCC
GCTGGCCAGCGGCAGGAGGGAGAGCGGGGCGCCCCACAGGAGGCACGAGCACTCCCCGCACCCCCAGAGC
AGGACCGGGACGCCCGAGAGAGCACAGCCGCCAAGACGGAAATCGGTGGAGGAGGAGAGCAAAAAGCTTA
AAGATGAGGCAGATTTTCAAAGAAAACTCCCATCGGGTCCACAGGACAGTTCCAGGCAATATAATCACGC
AGCTGCCAACCAAAATAGCAACGCCACTTCAAATATCAGGAAGGAGTTTGTGCCCAAATGGAATAAACCG
TCAGACGTCTCAGCTACAGAGAGAACTGCCAAATACACCATGGAAGGCAAAGGTCGAGCAGCGCACCCCG
CGCTCGCAGTTACCGTCCCAGGTCCTGCCGAGGTGCGGGTGTCAAACGTGCGGCCAAAGATGAAGGCCCT
GGATGCTGAGGACGGGAAGCGGGGCTCCACTGCATCGCAGTACGACAACGTGCCAGGCCCGGAGCTGGAC
AGCGGCGCTTCCGTGGAGGAGGCGCTGGAAAGGGCTTACTCCCAGAGCCCCCGGCATGCCCTTTACCCTC
CTAGCCCGAGAAAGCACGCTGAGCCAAGTTCTAGTCCATCAAAAGTATCCAACAAGTTTACTTTTAAAGT
ACAGCCTCCAAGTCATGCACGATATCCGTCCCAGCTAGATGGGGAAGCCCGAGGGCTAGCTCATCCCCCC
TCCTACAGCAATCCCCCCGTTTACCACGGAAACTCTCCCAAACACTTCCCTACTGCCAACAGCAGCTTTG
CTTCTCCACAGTTTAGCCCTGGGACTCAACTGAATCCTTCCAGGAGACCTCATGGTTCTACTCTTTCCGT
CAGTGCTTCTCCGGAGAAATCTTACAGCCGCCCAAGCCCCCTTGTACTGCCGTCTAGTCGAATAGAAGTC
CTCCCTGTTGACACTGGTGCTGGGGGATATTCGGGCAATTCAGGGTCACCAAAGAATGGAAAATTGATCA
TTCCACCAGTGGATTACTTGCCAGATAACAGAACATGGTCAGAAGTTAGTTATACATACAGACCTGAGAC
GCAGGGACAATCATGGACCCGAGATGCTAGCCGTGGCAATTTACCAAAATACTCAGCCTTTCAACTCGCA
CCCTTTCAGGACCATGGCCTCCCTGCAGTTTCTGTAGATAGTCCCGTGAGATATAAAGCTTCACCGGCCG
CAGAAGATGCCAGTCCATCTGGATATCCATATTCAGGGCCCCCGCCTCCAGCCTACCACTACAGGAATCG
GGACGGGCTTTCCATCCAAGAGTCAGTGTTGCTGTGA

Translation (828 aa):
MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPDHNVAVERQKHLE
IERTTKWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPD
IRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALV
KLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFTL
NLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELK
RAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSVGRPSPLASGRRESGAPHRRHEHSPHPQS
RTGTPERAQPPRRKSVEEESKKLKDEADFQRKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKP
SDVSATERTAKYTMEGKGRAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTASQYDNVPGPELD
SGASVEEALERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQLDGEARGLAHPP
SYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPEKSYSRPSPLVLPSSRIEV
LPVDTGAGGYSGNSGSPKNGKLIIPPVDYLPDNRTWSEVSYTYRPETQGQSWTRDASRGNLPKYSAFQLA
PFQDHGLPAVSVDSPVRYKASPAAEDASPSGYPYSGPPPPAYHYRNRDGLSIQESVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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