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Report for CCDS53417.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53417.2 Public Homo sapiens 1 FCRLA 24 110 108 CCDS HistoryNCBI Gene:84824Re-query CCDS DB by CCDS ID:53417.2Re-query CCDS DB by GeneID:84824See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53417.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309691.10 ENSP00000309596.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309691.10Link to Ensembl Protein Viewer:ENSP00000309596.6Re-query CCDS DB by Nucleotide ID:ENST00000309691Re-query CCDS DB by Protein ID:ENSP00000309596
Original member Current member NCBI NM_001184867.2 NP_001171796.2 Accepted alive Link to Nucleotide Sequence:NM_001184867.2Link to Protein Sequence:NP_001171796.2Re-query CCDS DB by Nucleotide ID:NM_001184867Re-query CCDS DB by Protein ID:NP_001171796Link to BLAST:NP_001171796.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171796.2 270 Q7L513-3 270 100% 0 0

Chromosomal Locations for CCDS 53417.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161707265 161707343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161710760 161710912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161711934 161712218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161713085 161713380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGAAGCTGGGCTGTGTCCTCATGGCCTGGGCCCTCTACCTTTCCCTTGGTGTGCTCTGGGTGGCCCAGA
TGCTACTGGCTGCCAGTTTTGAGACGCTGCAGTGTGAGGGACCTGTCTGCACTGAGGAGAGCAGCTGCCA
CACGGAGGATGACTTGACTGATGCAAGGGAAGCTGGCTTCCAGGTCAAGGCCTACACTTTCAGTGAACCC
TTCCACCTGATTGTGTCCTATGAACTGTTTCCAGCGCCAATTCTCAGAGCTGTACCCTCAGCTGAACCCC
AAGCAGGAAGCCCCATGACCCTGAGTTGTCAGACAAAGTTGCCCCTGCAGAGGTCAGCTGCCCGCCTCCT
CTTCTCCTTCTACAAGGATGGAAGGATAGTGCAAAGCAGGGGGCTCTCCTCAGAATTCCAGATCCCCACA
GCTTCAGAAGATCACTCCGGGTCATACTGGTGTGAGGCAGCCACTGAGGACAACCAAGTTTGGAAACAGA
GCCCCCAGCTAGAGATCAGAGTGCAGGGTGCTTCCAGCTCTGCTGCACCTCCCACATTGAATCCAGCTCC
TCAGAAATCAGCTGCTCCAGGAACTGCTCCTGAGGAGGCCCCTGGGCCTCTGCCTCCGCCGCCAACCCCA
TCTTCTGAGGATCCAGGCTTTTCTTCTCCTCTGGGGATGCCAGATCCTCATCTGTATCACCAGATGGGCC
TTCTTCTCAAACACATGCAGGATGTGAGAGTCCTCCTCGGTCACCTGCTCATGGAGTTGAGGGAATTATC
TGGCCACCGGAAGCCTGGGACCACAAAGGCTACTGCTGAATAG

Translation (270 aa):
MKLGCVLMAWALYLSLGVLWVAQMLLAASFETLQCEGPVCTEESSCHTEDDLTDAREAGFQVKAYTFSEP
FHLIVSYELFPAPILRAVPSAEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRGLSSEFQIPT
ASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQGASSSAAPPTLNPAPQKSAAPGTAPEEAPGPLPPPPTP
SSEDPGFSSPLGMPDPHLYHQMGLLLKHMQDVRVLLGHLLMELRELSGHRKPGTTKATAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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