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Report for CCDS52709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52709.1 Public Mus musculus 8 Coa6 23 108 98 CCDS HistoryNCBI Gene:67892Re-query CCDS DB by CCDS ID:52709.1Re-query CCDS DB by GeneID:67892See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059093.6 ENSMUSP00000058279.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059093.6Link to Ensembl Protein Viewer:ENSMUSP00000058279.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059093Re-query CCDS DB by Protein ID:ENSMUSP00000058279
Original member Current member EBI ENSMUST00000211868.1 ENSMUSP00000148765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211868.1Link to Ensembl Protein Viewer:ENSMUSP00000148765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211868Re-query CCDS DB by Protein ID:ENSMUSP00000148765
Original member NCBI NM_174987.4 NP_778152.1 Updated not alive Link to Nucleotide Sequence:NM_174987.4Link to Protein Sequence:NP_778152.1Re-query CCDS DB by Nucleotide ID:NM_174987Re-query CCDS DB by Protein ID:NP_778152
Current member NCBI NM_174987.5 NP_778152.1 Accepted alive Link to Nucleotide Sequence:NM_174987.5Link to Protein Sequence:NP_778152.1Re-query CCDS DB by Nucleotide ID:NM_174987Re-query CCDS DB by Protein ID:NP_778152Link to BLAST:NP_778152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778152.1 79 Q8BGD8 79 100% 0 0

Chromosomal Locations for CCDS 52709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 126422687 126422830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126425003 126425098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGGCAGCCCCTTCCATGAAGGAAAGGCAGGCATGCTGGGGTGCGCGCGACCTGTACTGGCGCTGCCTGG
AC
GACAACGCGGAGGACGCGGCCCGGTGCCAGAAGCTGAGGAGCTCGTTCGAGGCCAGCTGCCCCCAGCA
G
TGGATAAAATATTTTGACAAAAGAAGAGACTACTTAAAATTCAAGGAAAAATTTGAAGCAGGAGGATTC
CAG
TCTTCACAGTCGACTGAAAATTCCTAG


Translation (79 aa):
MAAPSMKERQACWGARDLYWRCLDDNAEDAARCQKLRSSFEASCPQQWIKYFDKRRDYLKFKEKFEAGGF
Q
SSQSTENS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser