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Report for CCDS52237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52237.1 Public Mus musculus 7 Fuz 23 108 98 CCDS HistoryNCBI Gene:70300Re-query CCDS DB by CCDS ID:52237.1Re-query CCDS DB by GeneID:70300See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071207.13 ENSMUSP00000071194.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071207.13Link to Ensembl Protein Viewer:ENSMUSP00000071194.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071207Re-query CCDS DB by Protein ID:ENSMUSP00000071194
Original member NCBI NM_027376.3 NP_081652.2 Updated not alive Link to Nucleotide Sequence:NM_027376.3Link to Protein Sequence:NP_081652.2Re-query CCDS DB by Nucleotide ID:NM_027376Re-query CCDS DB by Protein ID:NP_081652
Current member NCBI NM_027376.4 NP_081652.2 Accepted alive Link to Nucleotide Sequence:NM_027376.4Link to Protein Sequence:NP_081652.2Re-query CCDS DB by Nucleotide ID:NM_027376Re-query CCDS DB by Protein ID:NP_081652Link to BLAST:NP_081652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081652.2 415 Q3UYI6-1 415 99.759% 0 1

Chromosomal Locations for CCDS 52237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44896252 44896362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44896547 44896668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44896915 44896999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44897261 44897329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44897520 44897624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44898503 44898700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44898776 44898871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44898985 44899091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44899174 44899238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44899312 44899386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44900133 44900347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGGGGATGAGGGGCCGGGAAGCCCGGTGCATCTGCTGTGCCTCGCAGCCTCTAGCGGGGTTCCCCTGT
TT
TGTCGGAGTAGCAGCGGCGGCGCCCCCTCCCGTCAACAGCTTCCTTTCTCTGTCATCGGCTCTCTCAA
T
GGAGTCCACATGTTCGGCCAGAATCTGGATGTGCAACTGAACTCTGCAAGAACGGAAGACACAACCGTA
GTG
TGGAAGAACTTCCATGACAGTATCACTCTCATTGTTCTGTCATCTGAGGAGGGCACCTCTGAGCTGA
GG
CTGGAAAGAATGCTCCACATGGTGTTTGGGGCCATGGTTCTCATTGTGGGACTTGAGGAGCTGACCAA
T
ATCCGGAATGTAGAAAGACTGAAGAAAGAATTGAGGGCCAGCTACTGTCTCATCGACAGCTTCCTGGGG
AAC
TCAGAACTCATCGGAGACCTGACCCAGTGTGTGGACTGTGTCATTCCTCCAGAGGGGTCTGCCATGC
AG
GAAACCCTTTCAGGGTTTGCAGAGGCCACTGGCACAGCCTTTGTCAGCCTGCTTGTATCAGGCCGAGT
G
GTGGCAGCGACAGAGGGCTGGTGGCGCCTAGGCATGCCTGAAGCTGTACTACTCCCCTGGCTGGTGGGG
TCC
TTGCCACCACAAGCTGCTCGAGACTACCCGGTGTATCTGCCCCACGGGAGCCCCACGGTCCCACACA
GG
TTGTTGACCTTGACGCTGCTGCGTGGCCTGGAGCTGTGTCTGCTGTGCGGGCCGCGCCCGCCCCTTGG
C
CAGCTGGACCCACAGTTAATGGAACGCTGGTGGCAGCCTCTACTGGAGCCCCTCCGGGCCTGCCTGCCA
CTG
GGCCCTAGGGCGCTACCCGAAGGGTTCCCACTACACAGCGATATTCTTGGTCTGTTGTTACTCCACT
TG
GAACTGCGACGCTGCCTCTTTACTGTGGAGCCCTCCAAGGATAAAGAGCCTTCCCCTGAGCAGCGCAG
G
CGCCTCCTTAGAAACTTCTACACGCTGGTGGCCACCACCCACTTCCCGCCAGAACCAGGGCCTGCAGAG
AAA
CAAGAGGACACAGTCTACCCAGCCCAGATGCCCAGAGCCTGTTATCTCGTGCTAGGGCCAGGCATGG
GG
TGGCAGCTGGTGGCTGTGCAACTAGGGCTCCGGCTGCTACTATTGCTGCTCTCCCCTCACACCCCCAC
C
CACGGGCTGCGAAGCCTAGCCACCCGCACTCTGCAAGCCCTCACCCCGCTCCTCTGA


Translation (415 aa):
MGDEGPGSPVHLLCLAASSGVPLFCRSSSGGAPSRQQLPFSVIGSLNGVHMFGQNLDVQLNSARTEDTTV
V
WKNFHD
SITLIVLSSEEGTSELRLERMLHMVFGAMVLIVGLEELTNIRNVERLKKELRASYCLIDSFLG
N
SELIGDLTQCVDCVIPPEGSAMQ
ETLSGFAEATGTAFVSLLVSGRVVAATEGWWRLGMPEAVLLPWLVG
S
LPPQAARDYPVYLPHGSPT
VPHRLLTLTLLRGLELCLLCGPRPPLGQLDPQLMERWWQPLLEPLRACLP
L
GPRALPEGFPLHSDIL
GLLLLHLELRRCLFTVEPSKDKEPSPEQRRRLLRNFYTLVATTHFPPEPGPAE
K
QEDTVYPAQMPRACYLVLGPGMGWQLVAVQLGLRLLLLLLSPHTPTHGLRSLATRTLQALTPLL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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