NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51741.1 Public Mus musculus 6 Nrf1 23 108 98 CCDS HistoryNCBI Gene:18181Re-query CCDS DB by CCDS ID:51741.1Re-query CCDS DB by GeneID:18181See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069808.12 ENSMUSP00000065568.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069808.12Link to Ensembl Protein Viewer:ENSMUSP00000065568.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069808Re-query CCDS DB by Protein ID:ENSMUSP00000065568
Original member Current member EBI ENSMUST00000115206.7 ENSMUSP00000110860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115206.7Link to Ensembl Protein Viewer:ENSMUSP00000110860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115206Re-query CCDS DB by Protein ID:ENSMUSP00000110860
Original member NCBI NM_001164227.1 NP_001157699.1 Updated not alive Link to Nucleotide Sequence:NM_001164227.1Link to Protein Sequence:NP_001157699.1Re-query CCDS DB by Nucleotide ID:NM_001164227Re-query CCDS DB by Protein ID:NP_001157699
Current member NCBI NM_001164227.2 NP_001157699.1 Accepted alive Link to Nucleotide Sequence:NM_001164227.2Link to Protein Sequence:NP_001157699.1Re-query CCDS DB by Nucleotide ID:NM_001164227Re-query CCDS DB by Protein ID:NP_001157699Link to BLAST:NP_001157699.1
Original member NCBI NM_001361692.1 NP_001348621.1 Updated not alive Link to Nucleotide Sequence:NM_001361692.1Link to Protein Sequence:NP_001348621.1Re-query CCDS DB by Nucleotide ID:NM_001361692Re-query CCDS DB by Protein ID:NP_001348621
Current member NCBI NM_001361692.2 NP_001348621.1 Accepted alive Link to Nucleotide Sequence:NM_001361692.2Link to Protein Sequence:NP_001348621.1Re-query CCDS DB by Nucleotide ID:NM_001361692Re-query CCDS DB by Protein ID:NP_001348621Link to BLAST:NP_001348621.1

Chromosomal Locations for CCDS 51741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30089924 30090146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30095340 30095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30098449 30098575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30102169 30102309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30115013 30115171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30116096 30116293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30117056 30117157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30118949 30119106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30126235 30126359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30144581 30144837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGAGGAGCACGGAGTGACCCAAACTGAACACATGGCTACCATAGAAGCCCATGCAGTGGCCCAGCAAG
TCCAGCAGGTCCATGTAGCCACGTACACTGAGCACAGTATGCTAAGTGCTGATGAAGACTCCCCTTCCTC
CCCCGAGGACACTTCTTATGATGACTCGGACATCCTCAACTCCACGGCAGCTGATGAGGTAACTGCCCAT
CTGGCTGCTGCAGGTCCTGTGGGAATGGCCGCTGCTGCTGCTGTGGCAACAGGGAAGAAACGGAAACGGC
CTCATGTGTTTGAGTCTAATCCATCTATCCGAAAGAGACAGCAGACACGTTTGCTTCGGAAACTCAGAGC
CACGTTGGATGAGTACACGACGCGAGTGGGACAGCAAGCGATTGTACTCTGCATCTCACCCTCCAAACCC
AACCCTGTCTTCAAGGTGTTTGGCGCAGCACCTTTGGAGAATGTGGTGCGAAAGTACAAGAGCATGATCC
TGGAAGACCTCGAGTCTGCTCTGGCAGAACACGCCCCTGCGCCACAGGAGGTTAATTCAGAGCTGCCGCC
TCTCACCATCGATGGGATTCCAGTCTCTGTGGACAAAATGACCCAGGCTCAGCTTCGGGCATTTATCCCA
GAGATGCTCAAGTATTCCACAGGTCGGGGGAAACCAGGCTGGGGGAAAGAAAGCTGCAAGCCTATCTGGT
GGCCAGAAGATATCCCATGGGCCAATGTCCGCAGTGATGTCCGCACAGAAGAGCAAAAACAAAGGGTTTC
ATGGACCCAGGCATTACGGACCATAGTTAAAAATTGCTATAAGCAACATGGGCGGGAGGATCTTTTATAT
GCTTTTGAAGATCAGCAAACACAAACTCAGGCCACCACCACACACAGTATAGCTCATCTCGTACCATCAC
AGACCGTAGTACAGACCTTCAGCAACCCTGATGGCACCGTGTCGCTCATCCAGGTTGGTACAGGGGCAAC
AGTAGCCACATTGGCTGATGCTTCAGAACTGCCAACCACAGTCACTGTTGCCCAAGTGAATTACTCTGCT
GTGGCTGATGGAGAGGTGGAACAAAACTGGGCCACGTTACAGGGCGGTGAAATGACCATCCAGACGACGC
AAGCATCAGAGGCCACCCAGGCGGTAGCATCACTGGCAGAAGCCGCAGTGGCAGCTTCTCAGGAGATGCA
GCAGGGAGCCACTGTCACCATGGCCCTCAACAGTGAAGCTGCCGCCCATGCTGTCGCCACTCTGGCGGAA
GCCACCTTACAAGGTGGGGGACAGATAGTCCTGTCTGGGGAAACCGCAGCAGCCGTCGGAGCACTTACTG
GAGTCCAAGATGCTAATGGCCCAGATGGAGTTCATGCATGGACCATCAGCAAAGCCGTGACGGCTCCTCA
GGCTGCAGGAAAGATTCATACAGATTTTGGAAAGGGATTCATTATGGCGGAAGTAATGAAAGACGAAGAT
CTTAAAGAGGAAAGTTCTGAGAACGCAGCTAAGGCTGCTGGGAAGTACAAACAACAAGGCAGAGCTTACG
TTGTTGAAGACGGAGATATAATCTTCTTCAAATTTAATTCACCTCAGCAATTGAAAAAGAAATAA

Translation (534 aa):
MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAH
LAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKP
NPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIP
EMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLY
AFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSA
VADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
ATLQGGGQIVLSGETAAAVGALTGVQDANGPDGVHAWTISKAVTAPQAAGKIHTDFGKGFIMAEVMKDED
LKEESSENAAKAAGKYKQQGRAYVVEDGDIIFFKFNSPQQLKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH