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Report for CCDS50733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50733.1 Public Mus musculus 2 Macrod2 23 108 98 CCDS HistoryNCBI Gene:72899Re-query CCDS DB by CCDS ID:50733.1Re-query CCDS DB by GeneID:72899See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078027.11 ENSMUSP00000077174.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078027.11Link to Ensembl Protein Viewer:ENSMUSP00000077174.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078027Re-query CCDS DB by Protein ID:ENSMUSP00000077174
Original member Current member EBI ENSMUST00000110064.7 ENSMUSP00000105691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110064.7Link to Ensembl Protein Viewer:ENSMUSP00000105691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110064Re-query CCDS DB by Protein ID:ENSMUSP00000105691
Original member NCBI NM_001013802.3 NP_001013824.2 Updated not alive Link to Nucleotide Sequence:NM_001013802.3Link to Protein Sequence:NP_001013824.2Re-query CCDS DB by Nucleotide ID:NM_001013802Re-query CCDS DB by Protein ID:NP_001013824
Current member NCBI NM_001013802.4 NP_001013824.2 Accepted alive Link to Nucleotide Sequence:NM_001013802.4Link to Protein Sequence:NP_001013824.2Re-query CCDS DB by Nucleotide ID:NM_001013802Re-query CCDS DB by Protein ID:NP_001013824Link to BLAST:NP_001013824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013824.2 475 Q3UYG8 475 100% 0 0

Chromosomal Locations for CCDS 50733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 140395676 140395721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140400862 140400978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140452579 140452686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140825052 140825081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 141024025 141024141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 141515204 141515325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 141724624 141724654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 141810590 141810663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142176594 142176675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142210100 142210144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142217578 142217661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142256521 142256631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142261093 142261161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142296519 142296596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142317881 142317955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142318415 142318507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142374231 142374308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 142384321 142384388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTACCCCAGCAACAAGAAGAAAAAGGTGTGGAGAGAGGAGAAAGAACGTTTGCTGAAGATGACCTTAG
AGGAGAGACGCAAAGAATACATAAGGGACTATGTTTCTCTGAGCACCATTCTATCATGGAAGGAAGAGAT
GAAGAGCAAAGGCCAAAATGATGAAGAAAATACTCAGGAAGCACCACAGATGAAGAAAAGCTTGAGTGAA
AAGGTTTCTCTCTACAGAGGTGACATCACTCTGCTAGAGGTGGATGCAATCGTCAATGCGGCAAATGCCA
GTCTTCTCGGAGGAGGAGGTGTGGATGGCTGTATTCACAGAGCTGCTGGCCCCTGTTTGTTAGCTGAGTG
TCGGAACCTGAACGGCTGTGAGACTGGACATGCAAAAATCACATGTGGCTACGACCTCCCTGCAAAGTAT
GTCATCCATACTGTAGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCACAAGGAAGACCTTGCAAATT
GCTATCAATCATCCTTGAAGCTGGTGAAAGAAAATAACCTCCGATCAGTGGCTTTCCCCTGCATTTCAAC
AGGCATTTATGGTTTTCCGAATGAGCCTGCGGCAGTCATTGCCCTAGGTACGATTAAGGAATGGCTGGCC
AAGAATCACCAGGAGGTGGATCGAATCATCTTCTGTGTCTTCCTAGAAGTTGACTTCAAAATCTACAAAA
AGAAAATGAACGAGTTTTTCCCTGTTGATGATAACAATGAAGGAACCGATGCTGACATGAAAGAAGATTC
AGAAGGGCCAGAGCCTAAAGGCCTTTCTCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAGAAAGTTCT
AAAGACTCCAGTGAAGATGAAAGTGGTCCAGAGGAGAAGCAAACTGCGGAAGAAATGGAAGGGCAGAGCC
AAGAAGCAGGTGGGCTCAGGTTTCTTTTGAGGAATCTCCTTGGTCTCATCCACAGAGATGGTGTCAACAC
CACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGAT
GACAATACTGTAAAAGACAGTGACATGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAG
AGAATGACTCAGCAAAGAGTGAGGGGAAAACTGAGGCAGAATCCCCAAGCTCCTCTATGGAAACAGAAGA
CCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGATCCCCCTGATAGATGACCAA
GAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCA
GCGAGGCAGAAAACACTTCAGGTCCTGATGTTGACATGAACAGTCAGGTGGATGGTGTAAATGAGCCAAC
AGAGAGTCTGCAAGAAGATCTCCAATAA

Translation (475 aa):
MYPSNKKKKVWREEKERLLKMTLEERRKEYIRDYVSLSTILSWKEEMKSKGQNDEENTQEAPQMKKSLSE
KVSLYRGDITLLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNGCETGHAKITCGYDLPAKY
VIHTVGPIARGHINGSHKEDLANCYQSSLKLVKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKEWLA
KNHQEVDRIIFCVFLEVDFKIYKKKMNEFFPVDDNNEGTDADMKEDSEGPEPKGLSPPHKKSKAKKPESS
KDSSEDESGPEEKQTAEEMEGQSQEAGGLRFLLRNLLGLIHRDGVNTTPVPSPASEDKAEVHKDEDSAKD
DNTVKDSDMTNHSVCDQELPNGQENDSAKSEGKTEAESPSSSMETEDLSPNQEDAAIVEQPEVIPLIDDQ
EAQEGGEAQGKDAPAVFAESQGSSEAENTSGPDVDMNSQVDGVNEPTESLQEDLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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