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Report for CCDS50576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50576.1 Public Mus musculus 2 Ggta1 23 108 98 CCDS HistoryNCBI Gene:14594Re-query CCDS DB by CCDS ID:50576.1Re-query CCDS DB by GeneID:14594See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113002.8 ENSMUSP00000108626.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113002.8Link to Ensembl Protein Viewer:ENSMUSP00000108626.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113002Re-query CCDS DB by Protein ID:ENSMUSP00000108626
Original member Current member EBI ENSMUST00000164889.7 ENSMUSP00000132408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164889.7Link to Ensembl Protein Viewer:ENSMUSP00000132408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164889Re-query CCDS DB by Protein ID:ENSMUSP00000132408
Original member NCBI NM_001145821.2 NP_001139293.1 Updated not alive Link to Nucleotide Sequence:NM_001145821.2Link to Protein Sequence:NP_001139293.1Re-query CCDS DB by Nucleotide ID:NM_001145821Re-query CCDS DB by Protein ID:NP_001139293
Current member NCBI NM_001145821.3 NP_001139293.1 Accepted alive Link to Nucleotide Sequence:NM_001145821.3Link to Protein Sequence:NP_001139293.1Re-query CCDS DB by Nucleotide ID:NM_001145821Re-query CCDS DB by Protein ID:NP_001139293Link to BLAST:NP_001139293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139293.1 394 P23336-1 394 100% 0 0

Chromosomal Locations for CCDS 50576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 35402109 35402802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35407945 35408082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35413326 35413427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35414219 35414284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35422180 35422268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35423232 35423327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGATCACTATGCTTCAAGATCTCCATGTCAACAAGATCTCCATGTCAAGATCCAAGTCAGAAACAAGTC
TTCCATCCTCAAGATCTGGATCACAGGAGAAAATAATGAATGTCAAGGGAAAAGTAATCCTGTTGATGCT
GATTGTCTCAACCGTGGTTGTCGTGTTTTGGGAATATGTCAACAGAATTCCAGAGGTTGGTGAGAACAGA
TGGCAGAAGGACTGGTGGTTCCCAAGCTGGTTTAAAAATGGGACCCACAGTTATCAAGAAGACAACGTAG
AAGGACGGAGAGAAAAGGGTAGAAATGGAGATCGCATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCC
AAAGAACCGCCCGGATGTTTTGACAGTGACCCCGTGGAAGGCGCCGATTGTGTGGGAAGGCACTTATGAC
ACAGCTCTGCTGGAAAAGTACTACGCCACACAGAAACTCACTGTGGGGCTGACAGTGTTTGCTGTGGGAA
AGTACATTGAGCATTACTTAGAAGACTTTCTGGAGTCTGCTGACATGTACTTCATGGTTGGCCATCGGGT
CATATTTTACGTCATGATAGACGACACCTCCCGGATGCCTGTCGTGCACCTGAACCCTCTACATTCCTTA
CAAGTCTTTGAGATCAGGTCTGAGAAGAGGTGGCAGGATATCAGCATGATGCGCATGAAGACCATTGGGG
AGCACATCCTGGCCCACATCCAGCACGAGGTCGACTTCCTCTTCTGCATGGACGTGGATCAAGTCTTTCA
AGACAACTTCGGGGTGGAAACTCTGGGCCAGCTGGTAGCACAGCTCCAGGCCTGGTGGTACAAGGCCAGT
CCCGAGAAGTTCACCTATGAGAGGCGGGAACTGTCGGCCGCGTACATTCCATTCGGAGAGGGGGATTTTT
ACTACCACGCGGCCATTTTTGGAGGAACGCCTACTCACATTCTCAACCTCACCAGGGAGTGCTTTAAGGG
GATCCTCCAGGACAAGAAACATGACATAGAAGCCCAGTGGCATGATGAGAGCCACCTCAACAAATACTTC
CTTTTCAACAAACCCACTAAAATCCTATCTCCAGAGTATTGCTGGGACTATCAGATAGGCCTGCCTTCAG
ATATTAAAAGTGTCAAGGTAGCTTGGCAGACAAAAGAGTATAATTTGGTTAGAAATAATGTCTGA

Translation (394 aa):
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNRIPEVGENR
WQKDWWFPSWFKNGTHSYQEDNVEGRREKGRNGDRIEEPQLWDWFNPKNRPDVLTVTPWKAPIVWEGTYD
TALLEKYYATQKLTVGLTVFAVGKYIEHYLEDFLESADMYFMVGHRVIFYVMIDDTSRMPVVHLNPLHSL
QVFEIRSEKRWQDISMMRMKTIGEHILAHIQHEVDFLFCMDVDQVFQDNFGVETLGQLVAQLQAWWYKAS
PEKFTYERRELSAAYIPFGEGDFYYHAAIFGGTPTHILNLTRECFKGILQDKKHDIEAQWHDESHLNKYF
LFNKPTKILSPEYCWDYQIGLPSDIKSVKVAWQTKEYNLVRNNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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