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Report for CCDS50569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50569.1 Public Mus musculus 2 Eng 23 108 98 CCDS HistoryNCBI Gene:13805Re-query CCDS DB by CCDS ID:50569.1Re-query CCDS DB by GeneID:13805See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113272.7 ENSMUSP00000108897.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113272.7Link to Ensembl Protein Viewer:ENSMUSP00000108897.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113272Re-query CCDS DB by Protein ID:ENSMUSP00000108897
Original member Current member NCBI NM_001146350.1 NP_001139822.1 Accepted alive Link to Nucleotide Sequence:NM_001146350.1Link to Protein Sequence:NP_001139822.1Re-query CCDS DB by Nucleotide ID:NM_001146350Re-query CCDS DB by Protein ID:NP_001139822Link to BLAST:NP_001139822.1

Chromosomal Locations for CCDS 50569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32646958 32647024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32657516 32657670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32669423 32669563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32671342 32671507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32672218 32672383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32672837 32672957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32673250 32673424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32673592 32673734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32677553 32677690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32677923 32677961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32678456 32678572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32678891 32679142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32680281 32680335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32681196 32681386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGACCGTGGCGTGCTCCCTCTGCCCATTACCCTGCTGTTTGTCATCTATAGCTTTGTACCCACAACAG
GTCTCGCAGAAAGAGTCGGCTGTGATCTACAGCCTGTGGACCCCACAAGGGGTGAGGTGACGTTTACCAC
CAGCCAGGTCTCCGAGGGCTGTGTAGCTCAGGCTGCCAATGCTGTGCGTGAAGTCCACGTTCTCTTCCTG
GATTTTCCCGGAATGCTGTCACATCTGGAGCTGACTCTTCAGGCATCCAAGCAAAATGGCACGGAGACCC
AGGAGGTGTTCCTGGTCCTCGTTTCGAACAAAAATGTCTTCGTGAAGTTCCAGGCCCCGGAAATCCCATT
GCACTTGGCCTACGACTCCAGCCTGGTCATCTTCCAAGGACAGCCAAGAGTCAACATCACAGTGCTACCA
TCCCTTACCTCCAGGAAACAGATCCTCGACTGGGCAGCCACCAAGGGCGCCATCACCTCGATAGCAGCAC
TGGATGACCCCCAAAGCATCGTCCTCCAGTTGGGCCAAGACCCAAAGGCACCATTCTTGTGCTTGCCAGA
AGCTCACAAGGACATGGGCGCCACACTTGAATGGCAACCACGAGCCCAGACCCCAGTCCAAAGCTGTCGC
TTGGAAGGTGTGTCTGGCCACAAGGAGGCCTACATCCTGAGGATCCTGCCAGGTTCTGAGGCCGGGCCCC
GGACGGTGACCGTAATGATGGAACTGAGTTGCACATCTGGGGACGCCATTCTCATCCTGCATGGTCCTCC
ATATGTCTCCTGGTTCATCGACATCAACCACAGCATGCAGATCTTGACCACAGGTGAATACTCCGTCAAG
ATCTTTCCAGGAAGCAAGGTCAAAGGCGTGGAGCTCCCAGACACACCCCAAGGCCTGATAGCGGAGGCCC
GCAAGCTCAATGCCAGCATTGTCACCTCCTTTGTAGAGCTCCCTCTGGTCAGCAATGTCTCCCTGAGGGC
CTCCAGCTGCGGTGGTGTGTTCCAGACCACCCCTGCACCCGTTGTGACCACACCTCCCAAGGACACATGC
AGCCCCGTGCTACTCATGTCCCTGATCCAGCCAAAGTGTGGCAATCAGGTCATGACTCTGGCACTCAATA
AAAAACACGTGCAGACTCTCCAGTGCACCATCACAGGCCTGACTTTCTGGGACTCCAGCTGCCAGGCTGA
AGACACTGACGACCATCTTGTCCTGAGTAGCGCCTACTCCAGCTGCGGCATGAAAGTGACAGCCCATGTG
GTCAGCAATGAGGTGATCATCAGTTTCCCGTCAGGCTCACCACCACTTCGGAAAAAGGTACAGTGCATCG
ACATGGACAGCCTCTCCTTCCAGCTGGGCCTCTACCTCAGCCCGCACTTCCTCCAGGCATCCAACACCAT
CGAACTAGGCCAGCAGGCCTTCGTACAGGTGAGCGTGTCTCCATTGACCTCTGAGGTCACAGTCCAGCTA
GATAGCTGCCATCTGGACTTGGGGCCCGAAGGGGACATGGTGGAACTCATCCAGAGCCGAACAGCCAAGG
GCAGCTGTGTGACCTTGCTGTCTCCAAGCCCTGAAGGTGACCCACGCTTCAGCTTCCTCCTCCGGGTCTA
CATGGTGCCCACACCCACCGCTGGCACCCTCAGTTGCAACTTAGCTCTGCGCCCTAGCACCTTGTCCCAG
GAAGTCTACAAGACAGTCTCCATGCGCCTGAACATCGTCAGCCCTGACCTGTCTGGTAAAGGCCTTGTCC
TGCCCTCTGTACTGGGTATCACCTTTGGTGCCTTCCTGATTGGGGCCCTGCTCACAGCTGCACTCTGGTA
CATCTATTCTCACACACGTGAGTATCCCAAGCCTCCACCCCATTCCCACAGCAAGCGCTCAGGGCCCGTC
CACACCACCCCGGGGCACACCCAGTGGAGCCTCTGA

Translation (641 aa):
MDRGVLPLPITLLFVIYSFVPTTGLAERVGCDLQPVDPTRGEVTFTTSQVSEGCVAQAANAVREVHVLFL
DFPGMLSHLELTLQASKQNGTETQEVFLVLVSNKNVFVKFQAPEIPLHLAYDSSLVIFQGQPRVNITVLP
SLTSRKQILDWAATKGAITSIAALDDPQSIVLQLGQDPKAPFLCLPEAHKDMGATLEWQPRAQTPVQSCR
LEGVSGHKEAYILRILPGSEAGPRTVTVMMELSCTSGDAILILHGPPYVSWFIDINHSMQILTTGEYSVK
IFPGSKVKGVELPDTPQGLIAEARKLNASIVTSFVELPLVSNVSLRASSCGGVFQTTPAPVVTTPPKDTC
SPVLLMSLIQPKCGNQVMTLALNKKHVQTLQCTITGLTFWDSSCQAEDTDDHLVLSSAYSSCGMKVTAHV
VSNEVIISFPSGSPPLRKKVQCIDMDSLSFQLGLYLSPHFLQASNTIELGQQAFVQVSVSPLTSEVTVQL
DSCHLDLGPEGDMVELIQSRTAKGSCVTLLSPSPEGDPRFSFLLRVYMVPTPTAGTLSCNLALRPSTLSQ
EVYKTVSMRLNIVSPDLSGKGLVLPSVLGITFGAFLIGALLTAALWYIYSHTREYPKPPPHSHSKRSGPV
HTTPGHTQWSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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