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Report for CCDS49952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49952.1 Public Mus musculus 17 Smok2b 23 108 98 CCDS HistoryNCBI Gene:236574Re-query CCDS DB by CCDS ID:49952.1Re-query CCDS DB by GeneID:236574See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 49952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059824.6 ENSMUSP00000061516.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059824.6Link to Ensembl Protein Viewer:ENSMUSP00000061516.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059824Re-query CCDS DB by Protein ID:ENSMUSP00000061516
Original member Current member EBI ENSMUST00000162940.2 ENSMUSP00000124967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162940.2Link to Ensembl Protein Viewer:ENSMUSP00000124967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162940Re-query CCDS DB by Protein ID:ENSMUSP00000124967
Original member Current member NCBI NM_001167913.2 NP_001161385.1 Accepted alive Link to Nucleotide Sequence:NM_001167913.2Link to Protein Sequence:NP_001161385.1Re-query CCDS DB by Nucleotide ID:NM_001167913Re-query CCDS DB by Protein ID:NP_001161385Link to BLAST:NP_001161385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161385.1 484 Q9QYZ3 484 100% 0 0

Chromosomal Locations for CCDS 49952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 13234955 13236409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGAAAATTTTCATGCTCAATACGTGATGCTAGAGACTATCGGACATGGAGGCTGCTCCAAGGTGATGC
TG
GCCCGGCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAGTGAGTGTTGGTGCAA
T
CCTGTCATGTCTGAGGTAGAGTTACTGATGATGGCCGATCATCCGAATATCATCTCTCTCCTTCAAGTC
ATT
GAGACCAAGAAGAAAGTATACCTCATTATGGAGTTGTGTGAGGGTAAATCACTTTACCAACACATCA
GA
AACGCTGGCTACCTGCAGGAGGATGAAGCACGAGCATTATTCAAGCAGCTCTTAAGTGCTATGAACTA
C
TGCCACAACCAGGGTATAGTTCACAGGGACCTGAAACCTGACAATATTATGGTAGAAAAAGATGGAAAA
GTG
AAGATCATTGATTTTGGACTCGGAACCCAAGTGAAGCCAGGGCAAAAACTAAACTTATTCTGTGGGA
CT
TACCCATTTAGTGCTCCTGAGGTGCTCCTTAGCAGACCCTATGATGGGCCCAAGATCGATGTATGGAC
T
CTTGGAGTTGTGTTATATTTTATGGTAACTGGAAAGGTCCCGTTTGATGCTGCCAGCATACAAAAGCTG
GTA
AGGCAAATTTTGGCAGGGAAGTATTTTGTTCCCTCTAGACTGTCTGTAGAGCTCCGAGATCTGATTA
GT
CTTTTAATGACGGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGTGCATCCCTGGGTCAC
A
GAAGGCTCAGGGGTGTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTA
AAA
GCAATGGGATATATCGGGTTCCAAGCTCAAGACATTGAAGATTCTTTACGTCAGAGAAAATTCAACG
AA
ACCATGGCATCTTATTGTCTACTGAAAAAACAGATTCTTAAGGAATGTGACAGGCCAATCCGGGCTCA
G
CCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCTACTTTCCATCTTGGACTTCGG
AGG
AGAGAGACTGAACCCACGAGTCTCAGATTATCTGCCAATAGGCAAATGTCTGTCTGTGGAAGGAGTA
CT
AGTAAGAAAAGAGACAGAAGATTCAGTTGGCCCAGTGTTTCCGGCAGGCCACTCCACACAACACACAC
A
ATGGACCACACACACACCCGTACTAGGAGTGTTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCA
AAC
AGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGG
GC
TGGCCCAGAGGCATCAAGGGCTGGACTAGGAAGATAGGAAATGTGATGAGGAAGCTCTGTTGCTGTAT
C
CCATCAAAAGAGACATCTCACGTGGGGCACAGTAGAGTCTCCCCAAAAAAATAA


Translation (484 aa):
MENFHAQYVMLETIGHGGCSKVMLARHRLTGSHVAVKMIRKSECWCNPVMSEVELLMMADHPNIISLLQV
I
ETKKKVYLIMELCEGKSLYQHIRNAGYLQEDEARALFKQLLSAMNYCHNQGIVHRDLKPDNIMVEKDGK
V
KIIDFGLGTQVKPGQKLNLFCGTYPFSAPEVLLSRPYDGPKIDVWTLGVVLYFMVTGKVPFDAASIQKL
V
RQILAGKYFVPSRLSVELRDLISLLMTANPKLRPTVAEVMVHPWVTEGSGVFPDPCEEQMPLKPNPAIV
K
AMGYIGFQAQDIEDSLRQRKFNETMASYCLLKKQILKECDRPIRAQPMNPSVTPFPSLVDTSTFHLGLR
R
RETEPTSLRLSANRQMSVCGRSTSKKRDRRFSWPSVSGRPLHTTHTMDHTHTRTRSVPCIYSMFCTIQP
N
SSDDSTEGHTSASAEDKPVRSRGWPRGIKGWTRKIGNVMRKLCCCIPSKETSHVGHSRVSPKK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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