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Report for CCDS49277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49277.1 Public Mus musculus 13 Tmed9 23 108 98 CCDS HistoryNCBI Gene:67511Re-query CCDS DB by CCDS ID:49277.1Re-query CCDS DB by GeneID:67511See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109905.4 ENSMUSP00000105531.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109905.4Link to Ensembl Protein Viewer:ENSMUSP00000105531.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109905Re-query CCDS DB by Protein ID:ENSMUSP00000105531
Original member Current member NCBI NM_026211.3 NP_080487.2 Accepted alive Link to Nucleotide Sequence:NM_026211.3Link to Protein Sequence:NP_080487.2Re-query CCDS DB by Nucleotide ID:NM_026211Re-query CCDS DB by Protein ID:NP_080487Link to BLAST:NP_080487.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080487.2 235 Q99KF1 235 100% 0 0

Chromosomal Locations for CCDS 49277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55593174 55593357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55593501 55593601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55594705 55594830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55595468 55595614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55596841 55596990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGCTGCGGTGCGAGGCGTGCGGGTTGTCGGAAGCTCACCGGGTCTCTTGCTGGGGAGAGGGATGCGGG
CCTTCCTGCTACTGCTGTGGCTTGCAGCCCGCGGAAGCGCGCTGTATTTCCACATCGGAGAAACAGAAAA
GAAGTGCTTCATTGAGGAGATTCCGGACGAGACCATGGTCATCGGAAATTACCGGACGCAGCTGTATGAC
AAACAGCGGGAGGAGTACCAGCCAGCCACCCCTGGGCTTGGCATGTTCGTAGAGGTAAAAGACCCCGAGG
ACAAGGTCATCCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACCTTCACCTCCCACACCCCTGGTGA
GCACCAGATCTGTCTTCACTCAAATTCCACCAAGTTCTCCCTCTTTGCCGGAGGGATGCTGAGGGTTCAC
CTTGACATCCAAGTGGGCGAACATGCAAACGACTATGCAGAAATTGCTGCCAAGGACAAGCTGAGCGAGC
TGCAGCTGAGGGTGCGACAGCTGGTGGAGCAAGTGGAGCAGATCCAAAAGGAGCAGAACTACCAGCGGTG
GCGAGAAGAGCGCTTCAGACAAACCAGCGAAAGCACCAACCAGCGAGTGCTATGGTGGTCCATCCTGCAG
ACTCTCATCCTCGTGGCCATTGGCGTCTGGCAGATGCGGCACCTCAAGAGCTTTTTTGAAGCCAAGAAGT
TGGTGTAG

Translation (235 aa):
MAAVRGVRVVGSSPGLLLGRGMRAFLLLLWLAARGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYD
KQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVH
LDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQ
TLILVAIGVWQMRHLKSFFEAKKLV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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