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Report for CCDS49169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49169.1 Public Mus musculus 12 Evl 23 108 98 CCDS HistoryNCBI Gene:14026Re-query CCDS DB by CCDS ID:49169.1Re-query CCDS DB by GeneID:14026See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172409.1 ENSMUSP00000133072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172409.1Link to Ensembl Protein Viewer:ENSMUSP00000133072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172409Re-query CCDS DB by Protein ID:ENSMUSP00000133072
Original member Current member NCBI NM_001163396.2 NP_001156868.1 Accepted alive Link to Nucleotide Sequence:NM_001163396.2Link to Protein Sequence:NP_001156868.1Re-query CCDS DB by Nucleotide ID:NM_001163396Re-query CCDS DB by Protein ID:NP_001156868Link to BLAST:NP_001156868.1

Chromosomal Locations for CCDS 49169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108648349 108648483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108652922 108653099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108673289 108673352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108674407 108674465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108675397 108675626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108676102 108676223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108679829 108679889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108681491 108681554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108683195 108683261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108683348 108683410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108686050 108686116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108686408 108686465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108688029 108688066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGTCTACGATGACACCAGTAAGAAGTGGGTACCGATCAAGCCTGGCCAGCAGGGATTCAGCCGGATCA
ACATCTACCACAACACTGCCAGCAGCACCTTCAGAGTGGTCGGGGTCAAGCTACAGGACCAGCAGGTTGT
GATCAATTATTCAATTGTTAAAGGGCTGAAGTACAATCAGGCAACACCCACCTTCCATCAGTGGCGAGAT
GCCCGTCAGGTCTATGGCTTAAACTTTGCAAGTAAGGAAGAAGCAACCACATTCTCCAATGCCATGCTCT
TTGCCCTGAACATCATGAATTCCCAAGAAGGAGGCCCCTCCACACAGCGTCAGGTGCAGAATGGCCCCTC
TCCTGAGGAGATGGACATCCAGAGAAGACAAGTAATGGAGCAGCAGCACCGCCAGGAGTCTCTGGAGAGG
AGAATCTCGGCCACAGGGCCCATTCTCCCCCCTGGGCATCCCTCATCGGCAGCCAGCACCACTCTCTCCT
GTAGTGGACCTCCACCCCCGCCTCCACCCCCAGTTCCACCTCCACCCACAGGGTCTACTCCCCCACCCCC
ACCCCCACTGCCAGCTGGAGGAGCCCAGGGGACCAACCATGATGAGAGCTCTGCATCAGGACTGGCTGCT
GCTCTGGCGGGAGCCAAGCTAAGGAGGGTGCAGCGGCCAGAAGATGCATCTGGAGGCTCCAGTCCTAGTG
GGACTTCAAAGTCCGATGCCAACCGGGCAAGCAGTGGGGGAGGTGGAGGAGGCCTCATGGAAGAAATGAA
CAAGCTGCTGGCTAAGAGGAGAAAGGCAGCCTCCCAGACAGACAAGCCCGCTGACAGAAAGGAAGATGAG
AGCCAAACGGAAGACCCTAGCACCTCCCCATCCCCAGGTACCCGAGCCACCAGCCAGCCACCTAATTCCT
CAGAGGCTGGCAGAAAACCCTGGGAACGGAGCAACTCGGTGGAGAAACCTGTGTCCTCGTTGCTGTCCAG
AACCCCGTCTGTGGCAAAGAGCCCCGAAGCTAAGAGCCCCCTTCAGTCGCAGCCTCACTCTAGGGTGAAG
CCTGCTGGGAGTGTGAATGACGTGGGCCTGGATGCCTTAGATTTGGACCGGATGAAACAGGAGATCCTGG
AGGAGGTGGTTCGGGAGCTGCACAAGGTGAAGGAGGAGATCATTGATGCCATCAGGCAGGAGCTAAGTGG
GATCAGCACCACGTAA

Translation (401 aa):
MVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRD
ARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPSTQRQVQNGPSPEEMDIQRRQVMEQQHRQESLER
RISATGPILPPGHPSSAASTTLSCSGPPPPPPPPVPPPPTGSTPPPPPPLPAGGAQGTNHDESSASGLAA
ALAGAKLRRVQRPEDASGGSSPSGTSKSDANRASSGGGGGGLMEEMNKLLAKRRKAASQTDKPADRKEDE
SQTEDPSTSPSPGTRATSQPPNSSEAGRKPWERSNSVEKPVSSLLSRTPSVAKSPEAKSPLQSQPHSRVK
PAGSVNDVGLDALDLDRMKQEILEEVVRELHKVKEEIIDAIRQELSGISTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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