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Report for CCDS49011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49011.1 Public Mus musculus 11 Gps1 23 108 98 CCDS HistoryNCBI Gene:209318Re-query CCDS DB by CCDS ID:49011.1Re-query CCDS DB by GeneID:209318See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116305.7 ENSMUSP00000112007.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116305.7Link to Ensembl Protein Viewer:ENSMUSP00000112007.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116305Re-query CCDS DB by Protein ID:ENSMUSP00000112007
Original member Current member NCBI NM_001177874.2 NP_001171345.1 Accepted alive Link to Nucleotide Sequence:NM_001177874.2Link to Protein Sequence:NP_001171345.1Re-query CCDS DB by Nucleotide ID:NM_001177874Re-query CCDS DB by Protein ID:NP_001171345Link to BLAST:NP_001171345.1

Chromosomal Locations for CCDS 49011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120784310 120784342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785121 120785213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785700 120785881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786302 120786466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786552 120786687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786772 120786849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787009 120787069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787380 120787465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787697 120787791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787876 120787981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788062 120788142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788244 120788381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788462 120788596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788670 120788744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGCCGCTGCCGGTTCAGGTGTTTAACTTGCAGGGGGCCGTGGAACCCATGCAGATTGATGTCGATCCGC
AGGAAGATCCGCAGAACGCACCTGATGTCAACTATGTGGTGGAGAATCCCACCCTGGATCTGGAGCAGTA
TGCAGCCAGCTACAGTGGCCTGATGCGAATTGAGCGACTACAGTTTATTGCTGACCGTTGCCCTCCACTG
AGGGTAGAGGCCTTGAAAATGGCTCTATCCTTCGTGCAGAGGACCTTCAATGTGGACATGTATGAAGAGA
TACACCGGAAGCTCTCCGAGGCTACCAGGGAGCTGCAGAATGCACCTGATGCCATCCCTGAGAGTGGAGT
GGAGCCCCCGCCCCTGGACACAGCCTGGGTGGAGGCCACTCGGAAGAAGGCTCTGTTGAAACTGGAGAAG
CTGGACACGGACTTGAAGAACTATAAGGGCAATTCTATCAAAGAGAGCATCAGGCGCGGCCACGATGACC
TGGGTGATCACTACCTGGACTGTGGGGACCTCAGCAATGCCCTCAAATGTTACTCACGAGCCCGAGACTA
CTGCACCAGTGCTAAGCATGTCATCAACATGTGCCTCAACGTCATCAAGGTCAGTGTCTACTTGCAAAAT
TGGTCTCATGTGTTAAGCTATGTCAGCAAGGCCGAGTCTACTCCAGAGATTGCTGAGCAGCGGGGAGAGC
GGGACAGCCAGACGCAAGCCATCCTCACCAAGCTCAAGTGTGCTGCAGGCTTGGCTGAGCTGGCCGCACG
GAAGTATAAGCAAGCAGCCAAGTGCTTCCTTCTGGCTTCCTTTGATCACTGTGACTTCCCAGAGCTGCTG
TCCCCCAGCAATGTGGCTGTCTATGGTGGCCTGTGTGCCTTAGCCACCTTTGACCGGCAGGAGCTGCAAC
GAAATGTCATCTCCAGCAGTTCCTTCAAGCTGTTCCTGGAGCTGGAGCCACAGGTCAGAGACATCATCTT
CAAATTCTATGAATCCAAGTATGCCTCATGCTTGAAGATGCTGGACGAGATGAAGGATAACCTGCTCCTG
GACATGTACCTGGCCCCTCACGTCAGGACACTGTACACCCAGATTCGTAACCGGGCTCTTATCCAATACT
TCAGCCCCTATGTGTCAGCTGATATGCACAAGATGGCTGCAGCCTTCAACACAACAGTTGCAGCTCTGGA
AGATGAGCTGACACAGCTCATTCTGGAGGGCCTTATTAATGCCCGCATCGACTCACACAGCAAGATACTG
TATGCTCGAGATGTGGATCAGCGTAGCACCACCTTTGAGAAGTCCCTGCTGATGGGCAAGGAATTCCAAC
GACGTGCCAAAGCTATGATTCTGAGAGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTCTCCTCCTAG
AGAAGGGAGCCAAGGGGAGCTGACTCCAGCCAACAGCCAGTCACGCATGAGTACCAACATGTGA

Translation (487 aa):
MPLPVQVFNLQGAVEPMQIDVDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRCPPL
RVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEK
LDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN
WSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELL
SPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLL
DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKIL
YARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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