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Report for CCDS48407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48407.1 Public Mus musculus 1 Tex35 23 108 98 CCDS HistoryNCBI Gene:73435Re-query CCDS DB by CCDS ID:48407.1Re-query CCDS DB by GeneID:73435See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118207.7 ENSMUSP00000114092.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118207.7Link to Ensembl Protein Viewer:ENSMUSP00000114092.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118207Re-query CCDS DB by Protein ID:ENSMUSP00000114092
Original member Current member NCBI NM_028540.3 NP_082816.1 Accepted alive Link to Nucleotide Sequence:NM_028540.3Link to Protein Sequence:NP_082816.1Re-query CCDS DB by Nucleotide ID:NM_028540Re-query CCDS DB by Protein ID:NP_082816Link to BLAST:NP_082816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082816.1 208 Q14BK3-2 208 99.0385% 0 2

Chromosomal Locations for CCDS 48407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157099343 157099406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157099704 157099747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157100080 157100263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157100460 157100524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157104344 157104403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157105031 157105087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157107190 157107258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157107843 157107887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157108531 157108569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTCAGCCAAGAATGCAGAACTGAAGAAAACTAACCTGAAAAAGAACTACAAGGCTGTTTGCATGGAAC
CG
AAGCTGACACAAATATATGATTTCAAAGGATTTAAACAAGAAGGGCTACTCATCAGAAAAGGGATGAC
G
CGGGAGCTGAAGAACGAACTCAGGGAGGTGAGAGAACAACTCACGGAAAAAATGGAAGAGATAAAACAG
ATA
AAGGATATAATGGACAAAGATTTCGATAAACTTTATGAGTTTGTGGAAATTATGAAGGAAATGCAGC
AG
GATATGGACGAAAAGATGGATGTTTTAATTAATAATCAGAAGAACAACAAGCTTCCCTTTCAAAACCA
A
GCCAAGGAGCAGCAGAAATTCTGGCAGCTAGGAAAGATGGACAAAGGCTCCCAAGCCATGATCACAGAA
GAA
CCCGATGGAGCACCATTGGCTTGTGACAAGAATGTGGTGCCACCAAAACCAACGAGGAATCCACTGG
AG
TCCCTCCATCCATGTCAGAGTTGCTGCGAGAAATGTTTGTTGTGTGCCCTAAAGACCAACCGCAATCA
G
GGCAGGAGACCTTCACACCATGCCTGGGTGCCTTTTTCACCCTTGTCGTCTGGAGCTGCTTTCTAA


Translation (208 aa):
MSAKNAELKKTNLKKNYKAVCMEPKLTQIYDFKGFKQEGLLIRKGMTRELKNELREVREQLTEKMEEIKQ
I
KDIMDKDFDKLYEFVEIMK
EMQQDMDEKMDVLINNQKNNKLPFQNQAKEQQKFWQLGKMDKGSQAMITE
E
PDGAPLACDKNVVPPKPTRNPLESLHPCQSCC
EKCLLCALKTNRNQGRRPSHHAWVPFSPLSSGAAF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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