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Report for CCDS48365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48365.1 Public Mus musculus 1 Atp2b4 23 108 98 CCDS HistoryNCBI Gene:381290Re-query CCDS DB by CCDS ID:48365.1Re-query CCDS DB by GeneID:381290See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048953.13 ENSMUSP00000047978.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048953.13Link to Ensembl Protein Viewer:ENSMUSP00000047978.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048953Re-query CCDS DB by Protein ID:ENSMUSP00000047978
Original member NCBI NM_001167949.2 NP_001161421.1 Updated not alive Link to Nucleotide Sequence:NM_001167949.2Link to Protein Sequence:NP_001161421.1Re-query CCDS DB by Nucleotide ID:NM_001167949Re-query CCDS DB by Protein ID:NP_001161421
Current member NCBI NM_001167949.3 NP_001161421.1 Accepted alive Link to Nucleotide Sequence:NM_001167949.3Link to Protein Sequence:NP_001161421.1Re-query CCDS DB by Nucleotide ID:NM_001167949Re-query CCDS DB by Protein ID:NP_001161421Link to BLAST:NP_001161421.1

Chromosomal Locations for CCDS 48365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133711634 133711822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133715054 133715230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133716505 133716612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133717788 133717999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133718700 133718913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133719324 133719515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133726457 133726563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133727723 133727810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133728697 133728876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133729717 133729948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133730369 133730610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133731663 133731905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133732226 133732440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133735048 133735209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133736616 133736651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133737990 133738118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133738538 133738663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133739163 133739420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133739914 133740111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133753089 133753281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGACGAATCCACCAGGACAAAGCGTGTCAGCCAACACAGTGGCTGAGAGCCATGAAGGGGAGTTTGGCT
GCACCTTAATGGACCTGCGAAAGCTCATGGAGCTTCGTGGAGCTGATGCAGTGGCCCAGATCAGTGCCCA
CTACGGAGGGGTACAGGAAATCTGCACTAGACTGAAAACCTCCCCTATAGAAGGTCTATCTGGGAACCCT
GCAGATTTGGAGAAGCGTAGACTTGTTTTTGGAAAGAACGTGATACCTCCAAAAAGGCCCAAGACTTTCT
TAGAATTAGTGTGGGAAGCCCTGCAGGATGTCACGCTCATCATCCTAGAGATCGCAGCCATCATCTCCCT
GGTCCTGTCCTTCTACCGACCTCCGGGTGGAGATAATGAAATCTGTGGTCACATTGCAAGTAGCCCAGAA
GAAGAGGAGGAAGGAGAAACTGGCTGGATTGAGGGGGCGGCCATTCTCGCCTCGGTGATCATTGTGGTAC
TCGTGACAGCCTTCAATGACTGGAGCAAAGAGAAGCAGTTCCGGGGGCTGCAGAGTCGCATCGAACTGGA
GCAAAAATTCTCCATTATCCGGAATGGTCAGCTTATCCAACTCCCAGTGGCTGAGATTGTGGTGGGAGAT
ATTGCCCAGATCAAATACGGTGACCTGCTGCCTGCAGATGGAATTCTAATCCAGGGAAATGATCTGAAGA
TTGACGAGAGCTCTCTGACAGGAGAATCAGATCATGTCAAGAAGACTCTGGACAAAGACCCCATGTTGCT
CTCGGGGACTCACGTGATGGAAGGTTCTGGACGGATGGTAGTGACTGCTGTGGGGGTCAACTCCCAGACT
GGAATCATCTTCACCCTCTTAGGAGCTAGTGAGGAAGAAGATGATGATGACAAGAAGAAGAAAGGTAAAA
AACAAGGAGCCCCTGAAAATCGCAACAAAGCAAAGACCCAGGATGGAGTGGCCTTGGAAATCCAGCCACT
CAACAGCCAAGAGGGGCTCGACAGTGAGGACAAGGAGAAGAAAATAGCCAGGATACCCAAGAAAGAGAAG
TCGGTGCTGCAAGGCAAACTCACACGCCTGGCTGTGCAGATCGGGAAGGCGGGTCTGATCATGTCTGTCC
TCACAGTTGTCATCTTGATTCTGTACTTTGTGGTTGACAATTTCGTGATCCAGCGCCGAGAATGGCTTCC
TGAGTGCACTCCTGTCTATATCCAGTATTTTGTCAAGTTCTTCATCATCGGAGTCACTGTATTGGTAGTG
GCTGTGCCAGAGGGGCTGCCACTGGCTGTCACCATCTCACTAGCCTACTCTGTAAAGAAAATGATGAAGG
ACAACAACTTGGTACGGCACTTGGATGCTTGTGAGACAATGGGCAATGCCACAGCCATTTGCTCCGATAA
GACAGGCACACTGACCATGAACCGCATGACCGTGGTGCAAGCTTACATCGGGGGCACTCACTACCGCCAG
ATCCCACAGCCCGACGTCTTCCCACCCAAGGTTCTGGAGCTCATCGTCAATGGCATCTCTATCAACTGTG
CTTACACGTCTAAGATTCAGCCTCCAGAAAAGGAGGGAGGCCTACCCCGACAAGTAGGCAACAAGACAGA
GTGTGGGCTGCTGGGCTTTGTCACAGACCTGAAGCAGGACTACCAAGCAGTTCGCAATGAGGTGCCTGAG
GAGAAGCTCTTTAAGGTGTACACCTTCAACTCAGTGCGCAAGTCCATGAGCACTGTCATCAGGAAGCCGG
AAGGGGGCTTCCGCATGTTCAGCAAGGGCGCCTCTGAGATAATGCTGCGCAGGTGTGATCGAATCCTGAA
CAAGGAAGGAGAAATCAAATCGTTCAGAAGTAAGGACCGAGATAATATGGTACGCAATGTCATTGAGCCC
ATGGCCAGTGAAGGGCTCCGGACTATCTGCTTAGCTTACCGAGATTTTGATGGCACAGAGCCCTCGTGGG
ACATTGAGGGTGAAATCCTCACTTCGCTGATCTGCATTGCAGTGGTGGGCATTGAGGATCCTGTGCGCCC
GGAGGTACCAGATGCAATTGCCAAATGCAAACGGGCTGGCATTACTGTGAGGATGGTGACAGGTGATAAT
GTCAACACAGCCCGGGCCATTGCCACCAAATGTGGCATTCTGACTCCTAAAGATGACTTCTTGTGCCTGG
AAGGCAAAGAATTCAACAGTCTTATCCGAAATGAGAAGGGTGAGGTTGAACAAGAAAAGCTGGACAAGAT
CTGGCCCAAGCTTCGGGTACTGGCACGATCTTCTCCCACAGACAAGCACACATTGGTGAAAGGTATCATT
GACAGCACTGCTGGGGAACAGCGGCAGGTAGTGGCTGTCACCGGTGATGGAACAAATGATGGACCTGCTC
TGAAGAAAGCAGATGTCGGGTTTGCTATGGGCATCGCAGGCACAGATGTGGCTAAGGAGGCGTCAGACAT
CATCCTGACCGATGACAACTTCACCAGCATTGTGAAGGCAGTGATGTGGGGACGGAATGTGTATGACAGC
ATTTCCAAGTTCCTACAGTTCCAGCTCACTGTCAATGTGGTGGCCGTGATTGTGGCTTTCACTGGAGCCT
GCATCACTCAGGATTCCCCACTGAAAGCGGTGCAGATGTTGTGGGTTAACCTGATTATGGACACGTTTGC
TTCCCTGGCCCTGGCCACAGAGCCCCCCACCGAGTCTCTGTTGAGGCGGCGCCCCTATGGGCGAAACAAG
CCTCTGATCTCCCGCACTATGATGAAGAACATCTTGGGCCATGCTGTGTATCAGCTCCTAATCGTCTTCC
TCCTCGTCTTTGCTGGCGACACACTGTTCGACATTGACAGTGGGAGGAAGGCACCTCTCAATTCGCCACC
CAGCCAGCACTACACCATTGTTTTCAACACGTTTGTGCTGATGCAACTCTTCAACGAAATCAACGCTCGG
AAGATCCACGGTGAGAAGAACGTGTTTGCAGGCGTCTACCGCAACATCATTTTCTGCACTGTAGTTTTGG
GCACATTCTTCTGCCAGATCATGATTGTTGAACTGGGAGGGAAGCCCTTCAGCTGCACAAGCCTGACCAT
GGAGCAGTGGATGTGGTGTCTCTTTATAGGGATTGGAGAACTTTTGTGGGGTCAGGTCATCTCTGCAATA
CCTACCAAGTCTCTGAAGTTCCTGAAGGAGGCTGGCCACGGCAGTGACAAAGAGGACATCAGCAGGGATA
CTGAGGGAATGGACGAGATTGACCTTGCCGAGATGGAGCTTCGCCGAGGCCAGATCCTCTGGGTCCGTGG
CCTGAACCGGATTCAGACTCAGATTGACGTAATTAACAAATTCCAGACGGAAGCCCCCTTAAAGAGAGTC
CGAGAGAACATGACTCAACACCTTGATGTAAAACTGGTTCCTAGCTCCTATTCCGCAGCAGTTGCATCAC
TCAGAACTTGCCCCTCCATCTCTTCTGCCATCTCTTCTGCAGTTACATCTCCTCCTGTGGGCAGTGAGTG
A

Translation (1166 aa):
MTNPPGQSVSANTVAESHEGEFGCTLMDLRKLMELRGADAVAQISAHYGGVQEICTRLKTSPIEGLSGNP
ADLEKRRLVFGKNVIPPKRPKTFLELVWEALQDVTLIILEIAAIISLVLSFYRPPGGDNEICGHIASSPE
EEEEGETGWIEGAAILASVIIVVLVTAFNDWSKEKQFRGLQSRIELEQKFSIIRNGQLIQLPVAEIVVGD
IAQIKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKTLDKDPMLLSGTHVMEGSGRMVVTAVGVNSQT
GIIFTLLGASEEEDDDDKKKKGKKQGAPENRNKAKTQDGVALEIQPLNSQEGLDSEDKEKKIARIPKKEK
SVLQGKLTRLAVQIGKAGLIMSVLTVVILILYFVVDNFVIQRREWLPECTPVYIQYFVKFFIIGVTVLVV
AVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYIGGTHYRQ
IPQPDVFPPKVLELIVNGISINCAYTSKIQPPEKEGGLPRQVGNKTECGLLGFVTDLKQDYQAVRNEVPE
EKLFKVYTFNSVRKSMSTVIRKPEGGFRMFSKGASEIMLRRCDRILNKEGEIKSFRSKDRDNMVRNVIEP
MASEGLRTICLAYRDFDGTEPSWDIEGEILTSLICIAVVGIEDPVRPEVPDAIAKCKRAGITVRMVTGDN
VNTARAIATKCGILTPKDDFLCLEGKEFNSLIRNEKGEVEQEKLDKIWPKLRVLARSSPTDKHTLVKGII
DSTAGEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDS
ISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLRRRPYGRNK
PLISRTMMKNILGHAVYQLLIVFLLVFAGDTLFDIDSGRKAPLNSPPSQHYTIVFNTFVLMQLFNEINAR
KIHGEKNVFAGVYRNIIFCTVVLGTFFCQIMIVELGGKPFSCTSLTMEQWMWCLFIGIGELLWGQVISAI
PTKSLKFLKEAGHGSDKEDISRDTEGMDEIDLAEMELRRGQILWVRGLNRIQTQIDVINKFQTEAPLKRV
RENMTQHLDVKLVPSSYSAAVASLRTCPSISSAISSAVTSPPVGSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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