NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48303.1 Public Mus musculus 1 Armc9 23 108 98 CCDS HistoryNCBI Gene:78795Re-query CCDS DB by CCDS ID:48303.1Re-query CCDS DB by GeneID:78795See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000131412.7 ENSMUSP00000117267.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131412.7Link to Ensembl Protein Viewer:ENSMUSP00000117267.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131412Re-query CCDS DB by Protein ID:ENSMUSP00000117267
Original member NCBI NM_027456.2 NP_081732.1 Updated not alive Link to Nucleotide Sequence:NM_027456.2Link to Protein Sequence:NP_081732.1Re-query CCDS DB by Nucleotide ID:NM_027456Re-query CCDS DB by Protein ID:NP_081732
Current member NCBI NM_027456.3 NP_081732.1 Accepted alive Link to Nucleotide Sequence:NM_027456.3Link to Protein Sequence:NP_081732.1Re-query CCDS DB by Nucleotide ID:NM_027456Re-query CCDS DB by Protein ID:NP_081732Link to BLAST:NP_081732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081732.1 666 Q9D2I5-2 666 100% 0 0

Chromosomal Locations for CCDS 48303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86156955 86157005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86159995 86160123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86162665 86162835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86164696 86164851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86169910 86170002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86172124 86172148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86173557 86173714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86176814 86176912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86186105 86186139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86188877 86188988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86191010 86191102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86194277 86194367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86196319 86196442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86198242 86198381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86199838 86199914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86202490 86202564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86207953 86208043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86213050 86213105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86244566 86244670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86252277 86252396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGGGGATATCCTGGCTCATGAGTCTGAATTACTTGGATTAGTGAAAGAGTATTTAGATTTTGCTGAAT
TTGAAGACACCTTGAAGACATTTTCAAAAGAATGCAAAGTAAAAGGAAAGCCACTGTGTAAAAATGTCGG
TGGGCCATTAAAGAAGGACTCCAAGTCGCTCGTAATCCAGAGGGATTTGGTGGCAGCGTTTGACAGTGGA
GACCAGAAGGCGTTCTTTGACTTGTGGGAGGGGCACATTCCCAGCTCCGTCAGAGACACTGACTCCCTGG
CCCAGAAGCTGGAGTTCTACCTTCACATCCACTTTGCCATCTACCTTCTCAAGTACTGCAGAGGCAGGCC
GGACAAACAAGAGCTAGATAAAAGGATTTCTTATTTCAAAACCTACCTGGAGACAAAAGGGGCAGCGCTG
AGCCAGACTACGGAGTTTCTGCCCTTCTATGCCCTCCCCTTCGTGCCCAATCCGATGGTCCACCCCTCAT
TTAAAGAACTCTTCCAGGATTCTTGGACTCCAGAATTAAAGCTGAAGCTGGAAAAGTTTTTAGCTTTAAC
TTTTAAAGCCAATAACACACCAAAGCTTTTAACCATATATAAGGAGAATGGACCTAATAGCAAAGAACTG
CTGCAGCAGCTTCACCAGCAGCTGGTGGAGGCTGAGCGCCGGGCCATGACCTACCTGAAGCGGTACAATA
AGATCCAAGCCGACTACCACAACCTCATCGGTGTCACAGCTGAGCTGGTGGACTCTCTGGAGGCCACAGT
CAGCGGCAAGATGATCACCCCCGAGTACCTGCAGAGTGTCTGTGTCCGCCTCTTCAGTAACCAGATGCGG
CAGAGCCTGGCACACAGCGTGGACTTCACGAGGCCTGGGACGGCCTCAACCATGTTGCGAGCCTCCTTGG
CACCTGAGAAGCTGAAGGATGTCCCGCTACTGCCCTCCCTGGATTATGAGAAGCTGAAGAAGGATTTGAT
CTGGGGGAGTGACCGCTTGAAAGCCTTCTTGTTGCAGGCTCTGCGCTGGCGCTTGACCACATCCCATCCG
GGGGAGCAGAGGGAGACAGTCCTGCAAGCCTACATCAGCAATGACCTCTTGGATTGCCACAGCCATAACC
AGAGGAGTGTGCTGCAGCTGCTGCACTCCAAGAGCGAGGCTGTGCGGCAGTACATGGCCAGGCTCATCAA
TGCCCTGGCGTCACTGGCTGAAGGTCGCCTGTACCTGGCCCAGAACACAAAGGTGCTGCGGATGCTGGAG
GGAAGGCTCAAGGAGGAAGACAAGGATGTCATCACTCGTGAGAATGTCCTCGGGGCCTTGCAGAAGTTCA
GCCTCAGGCGGCCACTGCAGACAGCGATGATTCGAGATGGCCTCATCTTCTGGCTGATCGACCTACTGAA
GGACCCTGACTGCCTGTCTGACTACACATTGGAGTACTCCGTGGCTTTGCTCATGAACCTCTGCCTCCGC
AGTGCAGGAAAGAACATGTGTGCTAAGGTGGCAGGGCTCATGCTGAAAGTTCTTTCGGATCTCCTTGGAC
ACGAAAACCATGAGATCCAGCCGTATGTGAATGGAGCCCTGTACAGCATCCTCTCCATCCCGTCCATTCG
AGAGGAGGCCAGAGCCATGGGAATGGAGGATATCCTGCGATGCTTCATCAAAGAAGGCAACGCTGAAATG
ATCCGCCAGATAGAGTTTATCATCAAGCAGCTGAATTCTGAAGATTTACTCGATGGTGTTCTTGAATCCG
ACGATGATGAAGATGAAGATGATGAAGAGGATCATGACATCATGGAAGCTGACCTGGACAAAGATGAACT
GATCCAGCCCCAGCTGGGAGAACTCTCAGGCGAGAAGCTTCTAACCACAGAGTACTTGGGAATCATGACC
AACACTGGGAAGGCACGGAGGAAAGGGCCGGCCAGTGTGCAGTGGAGTGGGGATGAGCCCCTTCGTCGGC
CAGTCACCCCTGGTGGCCACAGGACAGGGTGCCCAGTGTAA

Translation (666 aa):
MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKVKGKPLCKNVGGPLKKDSKSLVIQRDLVAAFDSG
DQKAFFDLWEGHIPSSVRDTDSLAQKLEFYLHIHFAIYLLKYCRGRPDKQELDKRISYFKTYLETKGAAL
SQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLEKFLALTFKANNTPKLLTIYKENGPNSKEL
LQQLHQQLVEAERRAMTYLKRYNKIQADYHNLIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMR
QSLAHSVDFTRPGTASTMLRASLAPEKLKDVPLLPSLDYEKLKKDLIWGSDRLKAFLLQALRWRLTTSHP
GEQRETVLQAYISNDLLDCHSHNQRSVLQLLHSKSEAVRQYMARLINALASLAEGRLYLAQNTKVLRMLE
GRLKEEDKDVITRENVLGALQKFSLRRPLQTAMIRDGLIFWLIDLLKDPDCLSDYTLEYSVALLMNLCLR
SAGKNMCAKVAGLMLKVLSDLLGHENHEIQPYVNGALYSILSIPSIREEARAMGMEDILRCFIKEGNAEM
IRQIEFIIKQLNSEDLLDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGEKLLTTEYLGIMT
NTGKARRKGPASVQWSGDEPLRRPVTPGGHRTGCPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH