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Report for CCDS48294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48294.1 Public Mus musculus 1 Pax3 23 108 98 CCDS HistoryNCBI Gene:18505Re-query CCDS DB by CCDS ID:48294.1Re-query CCDS DB by GeneID:18505See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004994.15 ENSMUSP00000004994.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004994.15Link to Ensembl Protein Viewer:ENSMUSP00000004994.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000004994Re-query CCDS DB by Protein ID:ENSMUSP00000004994
Original member Current member NCBI NM_001159520.1 NP_001152992.1 Accepted alive Link to Nucleotide Sequence:NM_001159520.1Link to Protein Sequence:NP_001152992.1Re-query CCDS DB by Nucleotide ID:NM_001159520Re-query CCDS DB by Protein ID:NP_001152992Link to BLAST:NP_001152992.1

Chromosomal Locations for CCDS 48294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78102801 78102835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78103328 78103574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78121578 78121792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78122591 78122756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78132228 78132433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78192442 78192576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78193740 78193869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78195251 78195486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78196665 78196749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCCGGCCCGGGGCAGAATTACCCACGCAGCG
GC
TTCCCGCTGGAAGTGTCCACCCCTCTTGGCCAGGGCCGAGTCAACCAGCTCGGAGGAGTATTTATCAA
C
GGCAGGCCTCTGCCCAACCATATCCGCCACAAGATAGTGGAGATGGCCCACCATGGCATTCGGCCTTGC
GTC
ATTTCTCGCCAGCTTCGCGTGTCCCATGGTTGCGTCTCTAAGATCCTGTGCAGGTACCAGGAGACAG
GC
TCCATCCGACCTGGTGCCATCGGCGGCAGCAAACCCAAGCAGGTGACAACGCCTGACGTGGAGAAGAA
A
ATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTTAGCTGGGAAATCAGAGACAAATTGCTCAAGGAC
GCT
GTCTGTGATCGGAACACTGTGCCCTCAGTGAGTTCTATCAGCCGCATCCTGAGGAGTAAATTTGGAA
AA
GGAGAAGAGGAGGAGGCGGATCTAGAAAGGAAGGAAGCAGAAGAAAGCGAGAAAAAGGCTAAACACAG
C
ATCGATGGCATCCTGAGTGAGCGAGCCTCTGCACCTCAGTCAGATGAAGGCTCCGATATTGACTCTGAA
CCT
GATTTACCGCTGAAGAGGAAGCAGCGCAGGAGCAGAACCACCTTCACGGCAGAGCAGCTGGAGGAAC
TG
GAGCGGGCTTTCGAGAGAACCCACTACCCAGACATTTACACCAGGGAGGAGCTGGCCCAGAGGGCGAA
G
CTTACCGAGGCCCGAGTGCAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAACAAGCTGGAGCC
AAT
CAACTGATGGCTTTCAACCATCTCATTCCGGGGGGATTCCCTCCCACCGCCATGCCGACCCTGCCAA
CA
TACCAGCTGTCGGAGACCTCTTACCAGCCCACGTCTATTCCACAAGCCGTGTCAGATCCCAGTAGCAC
C
GTCCACAGACCTCAGCCGCTTCCTCCGAGCACTGTACACCAAAGCACTATTCCTTCGAACGCAGACAGC
AGC
TCTGCCTACTGCCTCCCCAGCACCAGGCATGGATTTTCAAGCTATACAGACAGCTTTGTGCCTCCAT
CG
GGGCCCTCCAACCCCATGAACCCCACCATCGGCAATGGCCTTTCACCTCAGGTAATGGGACTTCTGAC
C
AACCACGGTGGGGTACCGCACCAGCCTCAGACCGACTATGCTCTCTCCCCTCTCACTGGGGGCCTGGAA
CCC
ACGACCACGGTGTCAGCCAGCTGCAGTCAGAGACTGGAACATATGAAGAATGTGGACAGTCTGCCCA
CA
TCTCAGCCCTATTGTCCCCCCACCTATAGCACCGCAGGCTACAGTATGGACCCTGTCACAGGCTACCA
G
TATGGGCAGTATGGACAAAGTGCCTTTCATTATCTCAAGCCAGATATTGCATAA


Translation (484 aa):
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPC
V
ISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK
QVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKD
A
VCDRNTVPS
VSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSE
P
DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ
VWFSNRRARWRKQAGA
N
QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQ
AVSDPSSTVHRPQPLPPSTVHQSTIPSNADS
S
SAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ
VMGLLTNHGGVPHQPQTDYALSPLTGGLE
P
TTTVSASCSQRLEHMKNVDSLPTSQPYCPPTYSTAGYSMDPVTGYQYGQYGQ
SAFHYLKPDIA



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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