NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS48014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48014.1 Public Homo sapiens 9 RC3H2 24 110 108 CCDS HistoryNCBI Gene:54542Re-query CCDS DB by CCDS ID:48014.1Re-query CCDS DB by GeneID:54542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48014.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423239.6 ENSP00000411767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423239.6Link to Ensembl Protein Viewer:ENSP00000411767.1Re-query CCDS DB by Nucleotide ID:ENST00000423239Re-query CCDS DB by Protein ID:ENSP00000411767
Original member Current member NCBI NM_018835.5 NP_061323.2 Accepted alive Link to Nucleotide Sequence:NM_018835.5Link to Protein Sequence:NP_061323.2Re-query CCDS DB by Nucleotide ID:NM_018835Re-query CCDS DB by Protein ID:NP_061323Link to BLAST:NP_061323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061323.2 1064 Q9HBD1-4 1064 100% 0 0

Chromosomal Locations for CCDS 48014.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122853874 122854086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854185 122854266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854531 122854615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855184 122855397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855732 122855878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122857923 122858093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122858669 122859102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122859917 122860131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122865349 122865657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122877471 122877583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879755 122879873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879993 122880125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122880594 122880794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122883204 122883379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122890312 122890545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122892909 122893026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122897279 122897509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3195 nt):
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGA
ATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACTGTTTGCAAGACCTGCTTGAATAAACTTCATCG
AAAAGCTTGTCCTTTTGACCAGACTGCCATCAACACAGATATTGATGTACTTCCTGTCAACTTCGCACTT
CTCCAGTTAGTTGGAGCCCAGGTACCAGATCATCAGTCAATTAAGTTAAGTAATCTAGGTGAGAATAAAC
ACTATGAGGTTGCAAAGAAATGCGTTGAGGATTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAGG
TGTAGCTAGCTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTGGTGACACTTGTAAACTGT
CAACTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATGCGAGCAGCTCGTTCCCTTGGAGAAAGAACTGTAA
CAGAACTGATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAATCTATGGGCCGCTGTCAGGGCTCG
AGGATGCCAGTTTTTAGGGCCAGCTATGCAAGAAGAGGCCTTGAAGCTGGTGTTACTGGCATTAGAAGAT
GGTTCTGCCCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAGAGACTAGAACCAAGATTTCCTCAGG
CATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAGGTTACCAAAAG
AGATGAAGACTCTTCCCTAATGCAGCTGAAGGAGGAATTTCGGAGTTATGAAGCATTACGCAGAGAACAT
GATGCCCAAATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAACAGTGGTCCTCTCTTT
TGTATGGTGATTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAGCTACAGTCTCCAGAGTCATT
TGCAAAGAGTGTCCAGGAATTGACAATTGTTTTGCAACGAACAGGTGACCCAGCTAACTTAAATAGACTG
AGGCCTCATTTAGAGCTTCTTGCAAACATAGACCCTAATCCAGACGCTGTTTCACCAACTTGGGAGCAGC
TGGAAAATGCAATGGTAGCTGTTAAAACAGTAGTTCATGGCCTTGTGGACTTCATACAAAATTATAGTAG
AAAAGGCCATGAGACCCCTCAGCCTCAGCCAAACAGCAAATACAAGACTAGCATGTGCCGAGATTTGCGA
CAGCAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTATC
GATTAAGGAACAAAAAGATCAATGCCACTGTAAGAACGTTTCCTCTTCTAAATAAAGTTGGTGTAAACAA
CACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACAGGGAAAATTGTT
CCAAGTACAAACGGAATTTCAAATGCAGAAAACAGTGTTTCCCAGCTAATCTCACGTAGTACTGACAGTA
CCTTAAGAGCTCTGGAGACCGTGAAGAAAGTGGGAAAGGTTGGCGCTAATGGTCAGAATGCTGCTGGGCC
CTCTGCAGATTCTGTAACTGAAAATAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGTAGCAGCT
ACCTCAGCTGGGCCCTCTAATGTTGGAACAGAGCTGAATTCTGTGCCTCAAAAATCCAGCCCATTTCTAA
CTAGAGTACCAGTATATCCTCCGCATTCTGAAAACATTCAGTATTTTCAAGATCCAAGGACTCAGATACC
CTTTGAAGTCCCACAGTACCCACAGACAGGATACTATCCACCACCTCCAACGGTACCAGCTGGTGTGGCT
CCCTGTGTTCCTCGCTTTGTGAGGTCCAATAACGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCAT
ATGCCGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAGCCTCCTCCTCC
GCAGCCGTATGGACCAGTTCCTCCAGTACCTTCTGGAATGTATGCTCCTGTGTACGACAGCAGGCGCATC
TGGCGCCCACCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGC
ACTCATCTGTCTATCAGACATCTTTGCGGGAAAGATATAACTCATTAGATGGATATTATTCGGTGGCTTG
TCAGCCACCAAGTGAGCCAAGGACAACTGTGCCTTTACCAAGGGAACCTTGTGGTCATTTGAAGACCAGT
TGCGAGGAGCAGATAAGAAGAAAGCCAGATCAGTGGGCACAGTACCACACTCAGAAAGCACCTCTTGTCT
CTTCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTCTGTTCAGTGTAGACTTTCGTGC
GGATTTCTCAGAGAGTGTGAGTGGTACAAAATTTGAAGAAGATCATCTTTCCCATTATTCTCCCTGGTCT
TGTGGCACCATAGGCTCCTGTATAAATGCCATTGATTCAGAGCCCAAAGATGTCATTGCTAATTCAAATG
CTGTGTTAATGGACCTGGACAGTGGTGATGTTAAGAGAAGAGTACATTTATTTGAAACCCAGAGAAGGAC
AAAAGAAGAAGATCCAATAATTCCCTTTAGTGATGGACCCATCATCTCAAAATGGGGTGCGATTTCCAGA
TCTTCCCGTACAGGTTACCATACCACAGATCCTGTCCAGGCCACTGCTTCCCAAGGAAGTGCGACTAAGC
CCATCAGTGTATCAGATTATGTCCCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGCAACGA
GGCCACATCATCAGCACACTATGTTGAAAGGGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAG
CATTCCAGTACTGGGGACCTTTTGAGCCTTGAACTTCAGCAGGCCAAGAGCAACTCATTACTTCTTCAGA
GAGAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAA
CCTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAGGTAAAGAAACTGAACCTTTCGGCTTCATGCTTA
ATGTATTTGTTTTCTGCTGCTGCATCTTGGTTATACCATTACTGA

Translation (1064 aa):
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL
LQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC
QLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALED
GSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREH
DAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRL
RPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVIGSTETTGKIV
PSTNGISNAENSVSQLISRSTDSTLRALETVKKVGKVGANGQNAAGPSADSVTENKIGSPPKTPVSNVAA
TSAGPSNVGTELNSVPQKSSPFLTRVPVYPPHSENIQYFQDPRTQIPFEVPQYPQTGYYPPPPTVPAGVA
PCVPRFVRSNNVPESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRI
WRPPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTS
CEEQIRRKPDQWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRADFSESVSGTKFEEDHLSHYSPWS
CGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPIISKWGAISR
SSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATSSAHYVERDRFIVTDLSGHRK
HSSTGDLLSLELQQAKSNSLLLQREANALAMQQKWNSLDEGRHLTLNLLSKEIELRNGEVKKLNLSASCL
MYLFSAAASWLYHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH