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Report for CCDS4773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4773.1 Public Homo sapiens 6 PFDN6 24 110 108 CCDS HistoryNCBI Gene:10471Re-query CCDS DB by CCDS ID:4773.1Re-query CCDS DB by GeneID:10471See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4773.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374606.10 ENSP00000363734.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374606.10Link to Ensembl Protein Viewer:ENSP00000363734.5Re-query CCDS DB by Nucleotide ID:ENST00000374606Re-query CCDS DB by Protein ID:ENSP00000363734
Original member Current member EBI ENST00000374607.5 ENSP00000363735.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374607.5Link to Ensembl Protein Viewer:ENSP00000363735.1Re-query CCDS DB by Nucleotide ID:ENST00000374607Re-query CCDS DB by Protein ID:ENSP00000363735
Original member Current member EBI ENST00000374610.6 ENSP00000363738.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374610.6Link to Ensembl Protein Viewer:ENSP00000363738.2Re-query CCDS DB by Nucleotide ID:ENST00000374610Re-query CCDS DB by Protein ID:ENSP00000363738
Original member Current member EBI ENST00000395131.5 ENSP00000378563.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395131.5Link to Ensembl Protein Viewer:ENSP00000378563.1Re-query CCDS DB by Nucleotide ID:ENST00000395131Re-query CCDS DB by Protein ID:ENSP00000378563
Original member Current member NCBI NM_001185181.3 NP_001172110.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001185181.3Link to Protein Sequence:NP_001172110.1Re-query CCDS DB by Nucleotide ID:NM_001185181Re-query CCDS DB by Protein ID:NP_001172110Link to BLAST:NP_001172110.1
Original member Current member NCBI NM_001265595.2 NP_001252524.1 Accepted alive Link to Nucleotide Sequence:NM_001265595.2Link to Protein Sequence:NP_001252524.1Re-query CCDS DB by Nucleotide ID:NM_001265595Re-query CCDS DB by Protein ID:NP_001252524Link to BLAST:NP_001252524.1
Original member Current member NCBI NM_001265596.1 NP_001252525.1 Accepted alive Link to Nucleotide Sequence:NM_001265596.1Link to Protein Sequence:NP_001252525.1Re-query CCDS DB by Nucleotide ID:NM_001265596Re-query CCDS DB by Protein ID:NP_001252525Link to BLAST:NP_001252525.1
Original member Current member NCBI NM_014260.4 NP_055075.1 Accepted alive Link to Nucleotide Sequence:NM_014260.4Link to Protein Sequence:NP_055075.1Re-query CCDS DB by Nucleotide ID:NM_014260Re-query CCDS DB by Protein ID:NP_055075Link to BLAST:NP_055075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172110.1 129 O15212 129 100% 0 0
NP_001252524.1 129 O15212 129 100% 0 0
NP_001252525.1 129 O15212 129 100% 0 0
NP_055075.1 129 O15212 129 100% 0 0

Chromosomal Locations for CCDS 4773.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33289857 33289920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33290174 33290244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33290326 33290450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33290716 33290845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCGGAGCTGATCCAGAAGAAGCTACAGGGAGAAGTGGAGAAATATCAACAGCTACAGAAGGACTTAA
GTAAATCCATGTCGGGGAGGCAGAAACTTGAAGCACAACTAACAGAAAATAATATCGTGAAAGAGGAACT
GGCCCTGCTGGATGGGTCCAACGTGGTCTTTAAACTTCTGGGTCCGGTGCTAGTCAAACAGGAGCTGGGG
GAGGCTCGGGCCACAGTAGGGAAGAGGCTGGACTATATCACAGCTGAAATTAAGCGATACGAATCCCAGC
TTCGGGATCTTGAGCGGCAGTCAGAGCAACAGAGGGAGACCCTTGCTCAGCTGCAGCAGGAGTTCCAGCG
GGCCCAGGCAGCAAAGGCAGGGGCTCCTGGCAAGGCCTGA

Translation (129 aa):
MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG
EARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGAPGKA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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