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Report for CCDS46347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46347.1 Public Homo sapiens 2 LRRTM4 24 110 108 CCDS HistoryNCBI Gene:80059Re-query CCDS DB by CCDS ID:46347.1Re-query CCDS DB by GeneID:80059See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409088.3 ENSP00000386236.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409088.3Link to Ensembl Protein Viewer:ENSP00000386236.3Re-query CCDS DB by Nucleotide ID:ENST00000409088Re-query CCDS DB by Protein ID:ENSP00000386236
Original member Current member NCBI NM_024993.6 NP_079269.4 Accepted alive Link to Nucleotide Sequence:NM_024993.6Link to Protein Sequence:NP_079269.4Re-query CCDS DB by Nucleotide ID:NM_024993Re-query CCDS DB by Protein ID:NP_079269Link to BLAST:NP_079269.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079269.4 518 Q86VH4-2 518 100% 0 0

Chromosomal Locations for CCDS 46347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77518312 77519864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77521668 77521671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGGTTTCCATTTAATTACGCAGCTGAAAGGCATGAGTGTGGTGCTGGTGCTACTTCCTACACTGCTGC
TTGTTATGCTCACGGGTGCTCAGAGAGCTTGCCCAAAGAACTGCAGATGTGATGGCAAAATTGTGTACTG
TGAGTCTCATGCTTTCGCAGATATCCCTGAGAACATTTCTGGAGGGTCACAAGGCTTATCATTAAGGTTC
AACAGCATTCAGAAGCTCAAATCCAATCAGTTTGCCGGCCTTAACCAGCTTATATGGCTTTATCTTGACC
ATAATTACATTAGCTCAGTGGATGAAGATGCATTTCAAGGGATCCGTAGACTGAAAGAATTAATTCTAAG
CTCCAACAAAATTACTTATCTGCACAATAAAACATTTCACCCAGTTCCCAATCTCCGCAATCTGGACCTC
TCCTACAATAAGCTTCAGACATTGCAATCTGAACAATTTAAAGGCCTTCGGAAACTCATCATTTTGCACT
TGAGATCTAACTCACTAAAGACTGTGCCCATAAGAGTTTTTCAAGACTGTCGGAATCTTGATTTTTTGGA
TTTGGGTTACAATCGTCTTCGAAGCTTGTCCCGAAATGCATTTGCTGGCCTCTTGAAGTTAAAGGAGCTC
CACCTGGAGCACAACCAGTTTTCCAAGATCAACTTTGCTCATTTTCCACGTCTCTTCAACCTCCGCTCAA
TTTACTTACAATGGAACAGGATTCGCTCCATTAGCCAAGGTTTGACATGGACTTGGAGTTCCTTACACAA
CTTGGATTTATCAGGGAATGACATCCAAGGAATTGAGCCGGGCACATTTAAATGCCTCCCCAATTTACAA
AAATTGAATTTGGATTCCAACAAGCTCACCAATATCTCACAGGAAACTGTCAATGCGTGGATATCATTAA
TATCCATCACATTGTCTGGAAATATGTGGGAATGCAGTCGGAGCATTTGTCCTTTATTTTATTGGCTTAA
GAATTTCAAAGGAAATAAGGAAAGCACCATGATATGTGCGGGACCTAAGCACATCCAGGGTGAAAAGGTT
AGTGATGCAGTGGAAACATATAATATCTGTTCTGAAGTCCAGGTGGTCAACACAGAAAGATCACACCTGG
TGCCCCAAACTCCCCAGAAACCTCTGATTATCCCTAGACCTACCATCTTCAAACCTGACGTCACCCAATC
CACCTTTGAAACACCAAGCCCTTCCCCAGGGTTTCAGATTCCTGGCGCAGAGCAAGAGTATGAGCATGTT
TCATTTCACAAAATTATTGCCGGGAGTGTGGCTCTCTTTCTCTCAGTGGCCATGATCCTCTTGGTGATCT
ATGTGTCTTGGAAACGCTACCCAGCCAGCATGAAACAACTCCAGCAACACTCTCTTATGAAGAGGCGGCG
GAAAAAGGCCAGAGAGTCTGAAAGACAAATGAATTCCCCTTTACAGGAGTATTATGTGGACTACAAGCCT
ACAAACTCTGAGACCATGGATATATCGGTTAATGGATCTGGGCCCTGCACATATACCATCTCTGGCTCCA
GGGAATGTGAGGTATGA

Translation (518 aa):
MGFHLITQLKGMSVVLVLLPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRF
NSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLDL
SYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKEL
HLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDIQGIEPGTFKCLPNLQ
KLNLDSNKLTNISQETVNAWISLISITLSGNMWECSRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKV
SDAVETYNICSEVQVVNTERSHLVPQTPQKPLIIPRPTIFKPDVTQSTFETPSPSPGFQIPGAEQEYEHV
SFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKP
TNSETMDISVNGSGPCTYTISGSRECEV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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