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Report for CCDS45929.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45929.2 Public Homo sapiens 19 ARRDC5 24 110 108 CCDS HistoryNCBI Gene:645432Re-query CCDS DB by CCDS ID:45929.2Re-query CCDS DB by GeneID:645432See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 45929.1
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45929.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650722.2 ENSP00000498235.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650722.2Link to Ensembl Protein Viewer:ENSP00000498235.1Re-query CCDS DB by Nucleotide ID:ENST00000650722Re-query CCDS DB by Protein ID:ENSP00000498235
Original member Current member NCBI NM_001080523.3 NP_001073992.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080523.3Link to Protein Sequence:NP_001073992.2Re-query CCDS DB by Nucleotide ID:NM_001080523Re-query CCDS DB by Protein ID:NP_001073992Link to BLAST:NP_001073992.2

Chromosomal Locations for CCDS 45929.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4891046 4891573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4896671 4896876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4902573 4902825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGTCTGTGGTGAAGTCGATCGAATTAGTGCTGCCCGAGGATAGAATCTACCTGGCTGGCTCCAGCATAA
AAGGGCAGGTGATCTTAACCCTGAACAGCACCCTGGTGGACCCCATAGTGAAGGTGGAGCTCGTGGGAAG
GGGTTACGTCGAATGGAGTGAAGAAGCCGGGGCATCCTGTGATTATAGCAGAAATGTTATTTGCAACAAC
AAGGCAGACTACGTGCATAAGACAAAGACATTCCCAGTGGAGGATAATTGGTTAAGTGCAGGCAGCCACA
CCTTTGACTTCCATTTCAACTTACCTCCCAGGCTTCCTTCTACCTTCACCAGCAAATTTGGCCATGTCTT
CTATTTCGTACAAGCTTCCTGCATGGGCAGGGAACACATTTTAGCCAAGAAGAGGATGTACTTATTGGTT
CAAGGAACTTCCACCTTCCACAAAGAAACCCCATTCCAGAACCCCTTGTTCGTGGAGGCTGAGGAGAAAG
TCTCCTACAACTGCTGCCGCCAGGGCACTGTCTGTTTGCAAATCCAGATGGAAAGGAACACCTTCACGCC
AGGAGAGAAGGTCGTCTTCACAACAGAGATCAACAACCAGACCAGCAAATGCATCAAGACGGTCGTATTC
GCCCTGTATGCCCACATACAGTACGAGGGCTTCACGCCCAGTGCAGAGCGGCGGTCTCGGCTGGACAGCA
GCGAGCTTCTGAGGCAGGAGGCCAACACCCCCGTGACCCGCTTCAACACCACCAAGGTTGTCAGCACCTT
CAACCTGCCGTTGCTGCTGTCCGTGAGCAGCAGCACGCAGGACGGTGAGATCATGCACACTCGCTACGAG
CTGGTCACCACCGTGCACCTGCCCTGGTCCCTGACCAGCCTCAAGGCCAAAGTTCCCATCATCATCACCA
GCGCCTCAGTGGACTCTGCCATCTGCCAGCTGTCAGAGGACGGAGTGTTACCCGTGAACCCAGATCACCA
GAATTAA

Translation (328 aa):
MSVVKSIELVLPEDRIYLAGSSIKGQVILTLNSTLVDPIVKVELVGRGYVEWSEEAGASCDYSRNVICNN
KADYVHKTKTFPVEDNWLSAGSHTFDFHFNLPPRLPSTFTSKFGHVFYFVQASCMGREHILAKKRMYLLV
QGTSTFHKETPFQNPLFVEAEEKVSYNCCRQGTVCLQIQMERNTFTPGEKVVFTTEINNQTSKCIKTVVF
ALYAHIQYEGFTPSAERRSRLDSSELLRQEANTPVTRFNTTKVVSTFNLPLLLSVSSSTQDGEIMHTRYE
LVTTVHLPWSLTSLKAKVPIIITSASVDSAICQLSEDGVLPVNPDHQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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