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Report for CCDS45079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45079.1 Public Homo sapiens 14 HNRNPC 24 110 108 CCDS HistoryNCBI Gene:3183Re-query CCDS DB by CCDS ID:45079.1Re-query CCDS DB by GeneID:3183See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430246.6 ENSP00000442816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430246.6Link to Ensembl Protein Viewer:ENSP00000442816.1Re-query CCDS DB by Nucleotide ID:ENST00000430246Re-query CCDS DB by Protein ID:ENSP00000442816
Original member Current member EBI ENST00000553300.6 ENSP00000450544.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000553300.6Link to Ensembl Protein Viewer:ENSP00000450544.1Re-query CCDS DB by Nucleotide ID:ENST00000553300Re-query CCDS DB by Protein ID:ENSP00000450544
Original member Current member EBI ENST00000554969.5 ENSP00000450725.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554969.5Link to Ensembl Protein Viewer:ENSP00000450725.1Re-query CCDS DB by Nucleotide ID:ENST00000554969Re-query CCDS DB by Protein ID:ENSP00000450725
Original member Current member EBI ENST00000556897.5 ENSP00000451176.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556897.5Link to Ensembl Protein Viewer:ENSP00000451176.1Re-query CCDS DB by Nucleotide ID:ENST00000556897Re-query CCDS DB by Protein ID:ENSP00000451176
Original member Current member NCBI NM_001077443.2 NP_001070911.1 Accepted alive Link to Nucleotide Sequence:NM_001077443.2Link to Protein Sequence:NP_001070911.1Re-query CCDS DB by Nucleotide ID:NM_001077443Re-query CCDS DB by Protein ID:NP_001070911Link to BLAST:NP_001070911.1
Original member Current member NCBI NM_004500.4 NP_004491.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004500.4Link to Protein Sequence:NP_004491.2Re-query CCDS DB by Nucleotide ID:NM_004500Re-query CCDS DB by Protein ID:NP_004491Link to BLAST:NP_004491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070911.1 293 P07910-2 293 100% 0 0
NP_004491.2 293 P07910-2 293 100% 0 0

Chromosomal Locations for CCDS 45079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 21211223 21211306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21211406 21211566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21211810 21211923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21212960 21213117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21230319 21230366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21230997 21231072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21233953 21234193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCCAGCAACGTTACCAACAAGACAGATCCTCGCTCCATGAACTCCCGTGTATTCATTGGGAATCTCA
ACACTCTTGTGGTCAAGAAATCTGATGTGGAGGCAATCTTTTCGAAGTATGGCAAAATTGTGGGCTGCTC
TGTTCATAAGGGCTTTGCCTTCGTTCAGTATGTTAATGAGAGAAATGCCCGGGCTGCTGTAGCAGGAGAG
GATGGCAGAATGATTGCTGGCCAGGTTTTAGATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAA
AAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGCTCCTCTTTTGACTTGGACTATGACTTTCAACG
GGACTATTATGATAGGATGTACAGTTACCCAGCACGTGTACCTCCTCCTCCTCCTATTGCTCGGGCTGTA
GTGCCCTCGAAACGTCAGCGTGTATCAGGAAACACTTCACGAAGGGGCAAAAGTGGCTTCAATTCTAAGA
GTGGACAGCGGGGATCTTCCAAGTCTGGAAAGTTGAAAGGAGATGACCTTCAGGCCATTAAGAAGGAGCT
GACCCAGATAAAACAAAAAGTGGATTCTCTCCTGGAAAACCTGGAAAAAATTGAAAAGGAACAGAGCAAA
CAAGCAGTAGAGATGAAGAATGATAAGTCAGAAGAGGAGCAGAGCAGCAGCTCCGTGAAGAAAGATGAGA
CTAATGTGAAGATGGAGTCTGAGGGGGGTGCAGATGACTCTGCTGAGGAGGGGGACCTACTGGATGATGA
TGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGATCAAGGATGATGAAAAAGAGGCTGAGGAAGGA
GAGGATGACAGAGACAGCGCCAATGGCGAGGATGACTCTTAA

Translation (293 aa):
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
VPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSK
QAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEG
EDDRDSANGEDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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