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Report for CCDS4500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4500.1 Public Homo sapiens 6 RIOK1 24 110 108 CCDS HistoryNCBI Gene:83732Re-query CCDS DB by CCDS ID:4500.1Re-query CCDS DB by GeneID:83732See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379834.7 ENSP00000369162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379834.7Link to Ensembl Protein Viewer:ENSP00000369162.2Re-query CCDS DB by Nucleotide ID:ENST00000379834Re-query CCDS DB by Protein ID:ENSP00000369162
Original member Current member NCBI NM_031480.3 NP_113668.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031480.3Link to Protein Sequence:NP_113668.2Re-query CCDS DB by Nucleotide ID:NM_031480Re-query CCDS DB by Protein ID:NP_113668Link to BLAST:NP_113668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113668.2 568 Q9BRS2 568 100% 0 0

Chromosomal Locations for CCDS 4500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7390003 7390073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7393099 7393303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7395053 7395143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7396703 7396772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7398698 7398740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7400958 7401050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7402603 7402715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7402817 7402897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7403941 7404027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7404418 7404555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7404918 7405021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7405249 7405355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7410386 7410451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7411332 7411451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7412889 7412942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7414238 7414390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7417331 7417441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGGGCAATTCGACGACGCGGACTCCTCTGACA
GTGAAAACAGAGACTTGAAGACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCAAGACAATGT
GAATGAGAATGGTGAAGGTGAAATAGAAGATGAGGAGGAGGAGGGTTATGACGATGATGATGATGACTGG
GACTGGGATGAAGGAGTTGGAAAACTCGCCAAGGGTTATGTCTGGAATGGAGGAAGCAACCCACAGGCAA
ATCGACAGACCTCCGACAGCAGTTCAGCCAAAATGTCTACTCCAGCAGACAAGGTCTTACGGAAATTTGA
GAATAAAATTAATTTAGATAAGCTAAATGTTACTGATTCCGTCATAAATAAAGTCACCGAAAAGTCTAGA
CAAAAGGAAGCAGATATGTATCGCATCAAAGATAAGGCAGACAGAGCAACTGTAGAACAGGTGTTGGATC
CCAGAACAAGAATGATTTTATTCAAGATGTTGACTAGAGGAATCATAACAGAGATAAATGGCTGCATTAG
CACAGGAAAAGAAGCTAATGTATACCATGCTAGCACAGCAAATGGAGAGAGCAGAGCAATCAAAATTTAT
AAAACTTCTATTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGAGAATTCAGATTTCGTCATGGCT
ATTGTAAAGGAAACCCTAGGAAAATGGTGAAAACTTGGGCAGAAAAAGAAATGAGGAACTTAATCAGGCT
AAACACAGCAGAGATACCATGTCCAGAACCAATAATGCTAAGAAGTCATGTTCTTGTCATGAGTTTCATC
GGTAAAGATGACATGCCTGCACCACTCTTGAAAAATGTCCAGTTATCAGAATCCAAGGCTCGGGAGTTGT
ACCTGCAGGTCATTCAGTACATGAGAAGAATGTATCAGGATGCCAGACTTGTCCATGCAGATCTCAGTGA
ATTTAACATGCTGTACCACGGTGGAGGCGTGTATATCATTGACGTGTCTCAGTCCGTGGAGCACGACCAC
CCACATGCCTTGGAGTTCTTGAGAAAGGATTGCGCCAACGTCAATGATTTCTTTATGAGGCACAGTGTTG
CTGTCATGACTGTGCGGGAGCTCTTTGAATTTGTCACAGATCCATCCATTACACATGAGAACATGGATGC
TTATCTCTCAAAGGCCATGGAAATAGCATCTCAAAGGACCAAGGAAGAACGGTCTAGCCAAGATCATGTG
GATGAAGAGGTGTTTAAGCGAGCATATATTCCTAGAACCTTGAATGAAGTGAAAAATTATGAGAGGGATA
TGGACATAATTATGAAATTGAAGGAAGAGGACATGGCCATGAATGCCCAACAAGATAATATTCTATACCA
GACTGTTACAGGATTGAAGAAAGATTTGTCAGGAGTTCAGAAGGTCCCTGCACTCCTAGAAAATCAAGTG
GAGGAAAGGACTTGTTCTGATTCAGAAGATATTGGAAGCTCTGAGTGCTCTGACACAGACTCTGAAGAGC
AGGGAGACCATGCCCGCCCCAAGAAACACACCACGGACCCTGACATTGATAAAAAAGAAAGAAAAAAGAT
GGTCAAGGAAGCCCAGAGAGAGAAAAGAAAAAACAAAATTCCTAAACATGTGAAAAAAAGAAAGGAGAAG
ACAGCCAAGACGAAAAAAGGCAAATAG

Translation (568 aa):
MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDW
DWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSR
QKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAIKIY
KTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFI
GKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDH
PHALEFLRKDCANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHV
DEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQKVPALLENQV
EERTCSDSEDIGSSECSDTDSEEQGDHARPKKHTTDPDIDKKERKKMVKEAQREKRKNKIPKHVKKRKEK
TAKTKKGK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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