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Report for CCDS43349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43349.1 Public Homo sapiens 5 GIN1 24 110 108 CCDS HistoryNCBI Gene:54826Re-query CCDS DB by CCDS ID:43349.1Re-query CCDS DB by GeneID:54826See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399004.7 ENSP00000381970.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399004.7Link to Ensembl Protein Viewer:ENSP00000381970.2Re-query CCDS DB by Nucleotide ID:ENST00000399004Re-query CCDS DB by Protein ID:ENSP00000381970
Original member Current member NCBI NM_017676.2 NP_060146.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017676.2Link to Protein Sequence:NP_060146.2Re-query CCDS DB by Nucleotide ID:NM_017676Re-query CCDS DB by Protein ID:NP_060146Link to BLAST:NP_060146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060146.2 522 Q9NXP7-1 522 100% 0 0

Chromosomal Locations for CCDS 43349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103087898 103088172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103096541 103096826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103097314 103097490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103097590 103097781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103104541 103104846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103106716 103106909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103108569 103108707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGTCCGTAGTGGAAAAAATGGTGACCTTCATCTTAAACAGATTGCATATTACAAACGAACTGGTGAAT
AT
CATTCAACTACACTGCCAAGTGAGAGAAGTGGCATAAGAAGAGCAGCAAAAAAATTTGTCTTCAAAGA
A
AAAAAGCTGTTTTATGTTGGAAAAGACAGAAAACAAAATCGTTTGGTAATTGTTTCAGAAGAGGAAAAA
AAG
AAAGTCTTAAGAGAATGCCATGAAAATGACAGTGGAGCTCATCATGGTATATCCAGGACCCTCACTC
TG
GTAGAATCCAATTATTATTGGACATCTGTGACCAATGATGTCAAACAGTGGGTATATGCTTGTCAGCA
T
TGCCAAGTGGCAAAAAATACAGTTATTGTAGCACCGAAACAGCACCTTCTCAAGGTGGAAAATCCATGG
AGT
TTAGTTACTGTTGATCTGATGGGGCCTTTTCATACAAGCAACAGAAGTCATGTATATGCTATAATCA
TG
ACAGATTTGTTCACCAAATGGATTGTGATTTTGCCTCTATGTGATGTTTCAGCATCAGAAGTTTCTAA
A
GCTATTATCAATATATTTTTCTTATATGGACCTCCTCAGAAAATAATAATGGACCAAAGAGATGAATTC
ATT
CAACAGATCAATATTGAACTGTACAGATTGTTTGGCATAAAGCAAATTGTAATTTCTCACACCTCTG
GA
ACTGTTAACCCAACGGAAAGTACACCTAACACAATCAAAGCATTTCTCTCCAAACACTGTGCTGACCA
C
CCAAACAATTGGGATGATCACCTATCAGCTGTTTCATTTGCCTTCAATGTAACTCACTTGGAACCTACT
AAA
AATACACCATATTTTCAAATGTTTAGTCGAAATCCTTATATGCCTGAGACTTCAGATAGTCTTCATG
AA
GTGGATGGTGATAATACAAGTATGTTTGCCAAAATTCTAGATGCAATTAAAGAAGCTGATAAAATAAT
G
GAGAATAAGACAACTTCACTGGGCCAGATGGAGAACAACAATTTGGATGAACTAAATAAAAGCAAGATC
ATT
GTTAAAAAGAAACCCAAACAATTAAATCCATTTCATTTAAAAGTGGGTCATGAAGTTTTAAGACAAA
GG
AAAAATTGGTGGAAGGATGGTCGTTTTCAGTCTGAATGGGTTGGTCCTTGTGTCATAGACTATATTAC
A
GAAAGTGGATGTGCTGTCCTGAGAGACAACACTGGGGTTAGACTGAAAAGACCTATCAAAATGTCCCAC
CTT
AAGCCCTACATAAGAGAATCCAGTGAACAAGAAAGTCTTTATCTCTTGCAAGGTTCAGTAGTGGCAG
AT
CATGACTACATTGGATTGCCTGAAATTCCGATTGGAGCATATCAAGCAAATATTCTGGTGGAAGATGC
A
ACTATTGGTATAGTCGATAATGAATTACTGACATCAAGCAAGGATCGTGAACTATTAGAATATAGAAAT
ACG
AAAATCTCTCCATTGATAGACGATCATAGTTCTCTTGAAAAGCAGACTTTCAGTCTGTTGGACTCTT
CA
AACCAGGTTCTTGAATACTTAAGTTAG


Translation (522 aa):
MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEK
K
KVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQW
VYACQHCQVAKNTVIVAPKQHLLKVENPW
S
LVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIINIFFLYGPPQKIIMDQRDEF
I
QQ
INIELYRLFGIKQIVISHTSGTVNPTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPT
K
NTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQ
MENNNLDELNKSKI
I
VKKKPKQLNPFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH
L
KPYIRESSEQ
ESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSSKDRELLEYRN
T
KISPLIDDHSSLEKQTFSLLDSSNQVLEYLS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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