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Report for CCDS43338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43338.1 Public Homo sapiens 5 LYSMD3 24 110 108 CCDS HistoryNCBI Gene:116068Re-query CCDS DB by CCDS ID:43338.1Re-query CCDS DB by GeneID:116068See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315948.11 ENSP00000314518.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315948.11Link to Ensembl Protein Viewer:ENSP00000314518.6Re-query CCDS DB by Nucleotide ID:ENST00000315948Re-query CCDS DB by Protein ID:ENSP00000314518
Original member Current member NCBI NM_198273.2 NP_938014.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198273.2Link to Protein Sequence:NP_938014.1Re-query CCDS DB by Nucleotide ID:NM_198273Re-query CCDS DB by Protein ID:NP_938014Link to BLAST:NP_938014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938014.1 306 Q7Z3D4-1 306 100% 0 0

Chromosomal Locations for CCDS 43338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90518819 90519484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90525035 90525289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCAGGGAGGCATCAGAATCGTAGTTTTCCTCTTCCAGGAGTTCAGTCAAGTGGTCAAGTACATGCAT
TTGGAAATTGTTCAGACAGTGATATTTTGGAGGAGGATGCTGAAGTGTATGAACTTCGATCCAGAGGAAA
AGAGAAAGTCCGAAGAAGTACATCAAGAGATAGACTTGACGACATTATAGTATTAACAAAAGATATACAA
GAAGGAGATACATTAAATGCAATAGCCCTTCAGTACTGTTGTACGGTAGCAGATATCAAGAGAGTTAACA
ATCTCATCAGTGATCAAGACTTTTTTGCCCTTAGGTCTATCAAAATTCCAGTAAAAAAGTTCAGTTCCTT
GACCGAAACACTTTGTCCTCCAAAAGGAAGACAGACTTCACGTCATTCATCTGTTCAATACTCTTCCGAA
CAACAGGAAATTTTGCCAGCTAATGATTCTCTTGCTTACAGTGACTCAGCTGGTAGCTTTTTAAAAGAAG
TAGACCGAGACATAGAACAAATAGTAAAGTGTACAGACAATAAGAGAGAGAACCTCAATGAGGTAGTATC
GGCCTTAACAGCACAACAAATGCGTTTTGAACCTGATAACAAAAACACTCAACGTAAAGACCCCTATTAT
GGAGCAGACTGGGGAATAGGGTGGTGGACAGCTGTAGTGATAATGTTGATAGTAGGTATAATAACACCAG
TGTTTTATTTGTTGTATTATGAAATTTTAGCTAAGGTGGATGTTAGTCATCATTCAACAGTGGACTCTTC
ACATTTACATTCAAAAATCACACCCCCATCACAGCAGAGAGAAATGGAAAATGGAATTGTGCCAACTAAA
GGAATACATTTCAGCCAACAAGATGATCATAAACTGTATAGTCAAGATTCTCAGTCACCTGCTGCTCAAC
AGGAAACATAG

Translation (306 aa):
MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLDDIIVLTKDIQ
EGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSE
QQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQRKDPYY
GADWGIGWWTAVVIMLIVGIITPVFYLLYYEILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTK
GIHFSQQDDHKLYSQDSQSPAAQQET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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