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Report for CCDS43265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43265.1 Public Homo sapiens 4 USP53 24 110 108 CCDS HistoryNCBI Gene:54532Re-query CCDS DB by CCDS ID:43265.1Re-query CCDS DB by GeneID:54532See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450251.6 ENSP00000409906.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450251.6Link to Ensembl Protein Viewer:ENSP00000409906.1Re-query CCDS DB by Nucleotide ID:ENST00000450251Re-query CCDS DB by Protein ID:ENSP00000409906
Original member Current member EBI ENST00000692078.1 ENSP00000509606.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692078.1Link to Ensembl Protein Viewer:ENSP00000509606.1Re-query CCDS DB by Nucleotide ID:ENST00000692078Re-query CCDS DB by Protein ID:ENSP00000509606
Original member Current member NCBI NM_001371395.1 NP_001358324.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371395.1Link to Protein Sequence:NP_001358324.1Re-query CCDS DB by Nucleotide ID:NM_001371395Re-query CCDS DB by Protein ID:NP_001358324Link to BLAST:NP_001358324.1
Original member Current member NCBI NM_001371399.1 NP_001358328.1 Accepted alive Link to Nucleotide Sequence:NM_001371399.1Link to Protein Sequence:NP_001358328.1Re-query CCDS DB by Nucleotide ID:NM_001371399Re-query CCDS DB by Protein ID:NP_001358328Link to BLAST:NP_001358328.1
Original member Current member NCBI NM_001389658.1 NP_001376587.1 Accepted alive Link to Nucleotide Sequence:NM_001389658.1Link to Protein Sequence:NP_001376587.1Re-query CCDS DB by Nucleotide ID:NM_001389658Re-query CCDS DB by Protein ID:NP_001376587Link to BLAST:NP_001376587.1
Original member Current member NCBI NM_001389659.1 NP_001376588.1 Accepted alive Link to Nucleotide Sequence:NM_001389659.1Link to Protein Sequence:NP_001376588.1Re-query CCDS DB by Nucleotide ID:NM_001389659Re-query CCDS DB by Protein ID:NP_001376588Link to BLAST:NP_001376588.1
Original member Current member NCBI NM_019050.3 NP_061923.2 Accepted alive Link to Nucleotide Sequence:NM_019050.3Link to Protein Sequence:NP_061923.2Re-query CCDS DB by Nucleotide ID:NM_019050Re-query CCDS DB by Protein ID:NP_061923Link to BLAST:NP_061923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358324.1 1073 Q70EK8 1073 100% 0 0
NP_001358328.1 1073 Q70EK8 1073 100% 0 0
NP_001376587.1 1073 Q70EK8 1073 100% 0 0
NP_001376588.1 1073 Q70EK8 1073 100% 0 0
NP_061923.2 1073 Q70EK8 1073 100% 0 0

Chromosomal Locations for CCDS 43265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119239760 119239903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119245337 119245429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119248748 119248882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119256246 119256359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119256441 119256523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119259820 119259925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119260507 119260653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119261715 119261864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119267320 119267482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119268268 119268420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119269691 119269837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119271296 119272034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119273632 119273708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119291165 119291261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119292338 119293211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3222 nt):
ATGGCATGGGTAAAATTCTTACGGAAACCTGGTGGCAATCTTGGAAAAGTTTATCAGCCTGGAAGTATGC
TATCACTAGCCCCTACCAAAGGCTTGTTAAATGAACCAGGACAAAACAGCTGCTTTCTTAATAGCGCTGT
ACAGGTTTTATGGCAATTGGATATATTCCGACGAAGCTTGCGGGTTTTGACTGGACATGTTTGTCAGGGA
GATGCCTGTATATTTTGTGCATTGAAGACGATATTTGCACAGTTCCAACACAGTCGAGAAAAAGCACTTC
CCTCAGATAACATAAGGCATGCTCTTGCAGAAAGTTTCAAAGATGAGCAGCGATTTCAACTTGGCCTTAT
GGATGATGCTGCGGAGTGCTTTGAAAATATGTTGGAGAGGATTCATTTTCACATAGTGCCAAGCAGAGAT
GCAGACATGTGTACCTCTAAATCTTGTATCACTCACCAGAAGTTTGCTATGACTCTGTATGAACAGTGTG
TGTGTCGTAGCTGTGGAGCATCGTCAGATCCTCTACCTTTTACAGAATTTGTGCGGTACATTTCTACAAC
AGCCTTATGCAATGAGGTTGAAAGAATGTTGGAAAGGCATGAACGCTTTAAACCTGAAATGTTTGCAGAA
TTGCTACAAGCAGCAAATACAACAGATGACTATAGGAAATGTCCTAGTAACTGTGGCCAAAAAATAAAAA
TTCGCCGTGTTTTAATGAATTGCCCAGAGATTGTTACAATTGGTTTAGTCTGGGACTCCGAGCATTCTGA
CTTGACCGAAGCTGTTGTTCGGAATCTAGCAACACATCTTTATCTTCCTGGGCTTTTTTATAGAGTTACT
GATGAAAATGCCAAAAATAGTGAACTTAACCTTGTTGGTATGATCTGCTACACCAGCCAACATTATTGTG
CCTTTGCATTTCACACCAAAAGTTCCAAATGGGTATTTTTTGATGATGCAAATGTGAAAGAGATTGGAAC
TAGATGGAAAGATGTTGTCTCCAAATGCATTCGATGCCACTTTCAGCCACTACTTTTGTTTTATGCAAAC
CCAGATGGCACAGCAGTTTCTACTGAGGATGCACTCAGGCAGGTCATCAGCTGGTCACATTACAAATCTG
TTGCAGAAAATATGGGATGTGAAAAGCCTGTAATTCATAAGTCAGATAATTTAAAAGAAAATGGATTTGG
TGATCAGGCAAAGCAGAGAGAAAATCAGAAATTTCCAACTGATAATATTTCATCATCTAATCGGAGCCAC
AGTCACACAGGTGTAGGGAAAGGACCAGCTAAGTTAAGTCACATTGATCAAAGGGAAAAGATAAAAGACA
TTTCCAGAGAATGTGCTCTGAAAGCTATTGAACAGAAAAACTTACTTTCTTCACAAAGGAAAGATTTAGA
GAAGGGACAAAGAAAAGATTTAGGACGACATAGAGATTTGGTTGATGAAGACCTTTCACATTTCCAATCT
GGATCACCTCCTGCCCCAAATGGTTTTAAACAACATGGGAATCCACATCTATATCATAGTCAAGGAAAAG
GATCATATAAACATGACCGAGTTGTACCTCAGAGTCGAGCTTCTGCACAAATAATAAGTTCAAGTAAATC
CCAGATTCTTGCTCCAGGAGAGAAAATAACTGGCAAAGTTAAGAGTGACAATGGCACTGGATATGACACA
GACAGCAGCCAAGATTCTAGGGATAGAGGAAACAGCTGTGATAGCAGCAGTAAAAGCCGGAACCGAGGTT
GGAAACCTATGAGAGAAACATTAAATGTTGATAGTATTTTTAGTGAAAGTGAAAAAAGACAGCATAGTCC
AAGACATAAACCAAATATCAGTAATAAGCCTAAATCTAGCAAGGATCCGAGTTTTAGTAATTGGCCAAAA
GAGAATCCAAAGCAAAAAGGTTTAATGACCATATATGAAGATGAAATGAAGCAGGAAATAGGAAGCAGAA
GTTCCCTTGAATCTAATGGAAAAGGAGCAGAGAAAAATAAAGGCCTTGTAGAGGGTAAAGTGCATGGTGA
TAATTGGCAGATGCAAAGGACTGAGTCTGGATATGAAAGCAGTGATCACATCAGTAATGGTTCTACTAAT
TTGGACTCACCTGTTATCGATGGAAATGGTACAGTAATGGATATCAGTGGTGTTAAAGAAACAGTATGCT
TCAGTGACCAGATTACGACAAGCAACCTAAATAAAGAACGTGGGGACTGTACCTCCCTTCAGAGCCAACA
TCACTTAGAAGGCTTTAGAAAAGAACTCAGGAATTTGGAAGCAGGCTATAAATCTCATGAATTCCACCCA
GAATCACATTTACAAATAAAAAATCATTTGATAAAAAGATCACATGTACATGAAGACAATGGAAAGTTAT
TTCCTTCATCCAGTCTACAAATACCCAAGGACCATAATGCAAGAGAACATATCCACCAGTCAGATGAACA
GAAACTTGAAAAACCGAATGAATGCAAATTTTCTGAGTGGCTTAATATAGAAAATTCTGAGAGAACAGGT
TTGCCTTTTCACGTTGATAACTCTGCTTCTGGGAAGAGAGTGAACAGTAATGAACCATCTTCATTATGGT
CTTCACACCTAAGAACTGTTGGGTTAAAGCCAGAAACTGCTCCTCTCATCCAGCAACAAAATATCATGGA
TCAATGTTACTTTGAGAACTCTCTATCCACAGAATGTATAATTCGGTCAGCCAGCAGATCTGATGGGTGT
CAGATGCCAAAACTTTTTTGCCAGAATCTACCACCCCCTTTGCCACCAAAGAAATATGCTATAACCAGTG
TGCCACAGTCAGAGAAAAGCGAATCTACACCTGATGTCAAACTTACAGAGGTGTTTAAAGCTACCTCTCA
TCTTCCGAAGCACAGTTTAAGTACAGCTTCAGAACCAAGTTTAGAAGTGAGTACACATATGAATGATGAA
AGACATAAAGAAACATTTCAAGTGAGAGAATGTTTTGGCAACACACCAAACTGTCCATCCAGCTCCTCAA
CTAACGATTTTCAGGCAAACTCAGGTGCCATTGATGCATTTTGCCAACCAGAACTAGACTCTATTTCTAC
CTGTCCAAATGAGACAGTTTCATTAACTACCTATTTTTCAGTTGATAGCTGCATGACGGATACATATAGA
TTGAAATACCATCAGAGGCCCAAGCTCTCTTTTCCAGAGAGCAGTGGCTTTTGTAATAATTCACTATCTT
AG

Translation (1073 aa):
MAWVKFLRKPGGNLGKVYQPGSMLSLAPTKGLLNEPGQNSCFLNSAVQVLWQLDIFRRSLRVLTGHVCQG
DACIFCALKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVPSRD
ADMCTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCNEVERMLERHERFKPEMFAE
LLQAANTTDDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWDSEHSDLTEAVVRNLATHLYLPGLFYRVT
DENAKNSELNLVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVVSKCIRCHFQPLLLFYAN
PDGTAVSTEDALRQVISWSHYKSVAENMGCEKPVIHKSDNLKENGFGDQAKQRENQKFPTDNISSSNRSH
SHTGVGKGPAKLSHIDQREKIKDISRECALKAIEQKNLLSSQRKDLEKGQRKDLGRHRDLVDEDLSHFQS
GSPPAPNGFKQHGNPHLYHSQGKGSYKHDRVVPQSRASAQIISSSKSQILAPGEKITGKVKSDNGTGYDT
DSSQDSRDRGNSCDSSSKSRNRGWKPMRETLNVDSIFSESEKRQHSPRHKPNISNKPKSSKDPSFSNWPK
ENPKQKGLMTIYEDEMKQEIGSRSSLESNGKGAEKNKGLVEGKVHGDNWQMQRTESGYESSDHISNGSTN
LDSPVIDGNGTVMDISGVKETVCFSDQITTSNLNKERGDCTSLQSQHHLEGFRKELRNLEAGYKSHEFHP
ESHLQIKNHLIKRSHVHEDNGKLFPSSSLQIPKDHNAREHIHQSDEQKLEKPNECKFSEWLNIENSERTG
LPFHVDNSASGKRVNSNEPSSLWSSHLRTVGLKPETAPLIQQQNIMDQCYFENSLSTECIIRSASRSDGC
QMPKLFCQNLPPPLPPKKYAITSVPQSEKSESTPDVKLTEVFKATSHLPKHSLSTASEPSLEVSTHMNDE
RHKETFQVRECFGNTPNCPSSSSTNDFQANSGAIDAFCQPELDSISTCPNETVSLTTYFSVDSCMTDTYR
LKYHQRPKLSFPESSGFCNNSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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