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Report for CCDS43264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43264.1 Public Homo sapiens 4 ARSJ 24 110 108 CCDS HistoryNCBI Gene:79642Re-query CCDS DB by CCDS ID:43264.1Re-query CCDS DB by GeneID:79642See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43264.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315366.8 ENSP00000320219.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315366.8Link to Ensembl Protein Viewer:ENSP00000320219.7Re-query CCDS DB by Nucleotide ID:ENST00000315366Re-query CCDS DB by Protein ID:ENSP00000320219
Original member Current member NCBI NM_024590.4 NP_078866.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024590.4Link to Protein Sequence:NP_078866.3Re-query CCDS DB by Nucleotide ID:NM_024590Re-query CCDS DB by Protein ID:NP_078866Link to BLAST:NP_078866.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078866.3 599 Q5FYB0 599 100% 0 0

Chromosomal Locations for CCDS 43264.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 113902274 113903675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 113978437 113978834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCTCCCAGGGGCTGTGCGGGGCATCCGCCTCCGCCTTCTCCACAGGCCTGTGTCTGTCCTGGAAAGA
TGCTAGCAATGGGGGCGCTGGCAGGATTCTGGATCCTCTGCCTCCTCACTTATGGTTACCTGTCCTGGGG
CCAGGCCTTAGAAGAGGAGGAAGAAGGGGCCTTACTAGCTCAAGCTGGAGAGAAACTAGAGCCCAGCACA
ACTTCCACCTCCCAGCCCCATCTCATTTTCATCCTAGCGGATGATCAGGGATTTAGAGATGTGGGTTACC
ACGGATCTGAGATTAAAACACCTACTCTTGACAAGCTCGCTGCCGAAGGAGTTAAACTGGAGAACTACTA
TGTCCAGCCTATTTGCACACCATCCAGGAGTCAGTTTATTACTGGAAAGTATCAGATACACACCGGACTT
CAACATTCTATCATAAGACCTACCCAACCCAACTGTTTACCTCTGGACAATGCCACCCTACCTCAGAAAC
TGAAGGAGGTTGGATATTCAACGCATATGGTCGGAAAATGGCACTTGGGTTTTTACAGAAAAGAATGCAT
GCCCACCAGAAGAGGATTTGATACCTTTTTTGGTTCCCTTTTGGGAAGTGGGGATTACTATACACACTAC
AAATGTGACAGTCCTGGGATGTGTGGCTATGACTTGTATGAAAACGACAATGCTGCCTGGGACTATGACA
ATGGCATATACTCCACACAGATGTACACTCAGAGAGTACAGCAAATCTTAGCTTCCCATAACCCCACAAA
GCCTATATTTTTATATATTGCCTATCAAGCTGTTCATTCACCACTGCAAGCTCCTGGCAGGTATTTCGAA
CACTACCGATCCATTATCAACATAAACAGGAGGAGATATGCTGCCATGCTTTCCTGCTTAGATGAAGCAA
TCAACAACGTGACATTGGCTCTAAAGACTTATGGTTTCTATAACAACAGCATTATCATTTACTCTTCAGA
TAATGGTGGCCAGCCTACGGCAGGAGGGAGTAACTGGCCTCTCAGAGGTAGCAAAGGAACATATTGGGAA
GGAGGGATCCGGGCTGTAGGCTTTGTGCATAGCCCACTTCTGAAAAACAAGGGAACAGTGTGTAAGGAAC
TTGTGCACATCACTGACTGGTACCCCACTCTCATTTCACTGGCTGAAGGACAGATTGATGAGGACATTCA
ACTAGATGGCTATGATATCTGGGAGACCATAAGTGAGGGTCTTCGCTCACCCCGAGTAGATATTTTGCAT
AACATTGACCCCATATACACCAAGGCAAAAAATGGCTCCTGGGCAGCAGGCTATGGGATCTGGAACACTG
CAATCCAGTCAGCCATCAGAGTGCAGCACTGGAAATTGCTTACAGGAAATCCTGGCTACAGCGACTGGGT
CCCCCCTCAGTCTTTCAGCAACCTGGGACCGAACCGGTGGCACAATGAACGGATCACCTTGTCAACTGGC
AAAAGTGTATGGCTTTTCAACATCACAGCCGACCCATATGAGAGGGTGGACCTATCTAACAGGTATCCAG
GAATCGTGAAGAAGCTCCTACGGAGGCTCTCACAGTTCAACAAAACTGCAGTGCCGGTCAGGTATCCCCC
CAAAGACCCCAGAAGTAACCCTAGGCTCAATGGAGGGGTCTGGGGACCATGGTATAAAGAGGAAACCAAG
AAAAAGAAGCCAAGCAAAAATCAGGCTGAGAAAAAGCAAAAGAAAAGCAAAAAAAAGAAGAAGAAACAGC
AGAAAGCAGTCTCAGGTTCAACTTGCCATTCAGGTGTTACTTGTGGATAA

Translation (599 aa):
MAPRGCAGHPPPPSPQACVCPGKMLAMGALAGFWILCLLTYGYLSWGQALEEEEEGALLAQAGEKLEPST
TSTSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGL
QHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHY
KCDSPGMCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFE
HYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAGGSNWPLRGSKGTYWE
GGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILH
NIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQSFSNLGPNRWHNERITLSTG
KSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEETK
KKKPSKNQAEKKQKKSKKKKKKQQKAVSGSTCHSGVTCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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