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Report for CCDS42205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42205.1 Public Homo sapiens 16 SDR42E1 24 110 108 CCDS HistoryNCBI Gene:93517Re-query CCDS DB by CCDS ID:42205.1Re-query CCDS DB by GeneID:93517See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42205.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328945.7 ENSP00000332407.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328945.7Link to Ensembl Protein Viewer:ENSP00000332407.4Re-query CCDS DB by Nucleotide ID:ENST00000328945Re-query CCDS DB by Protein ID:ENSP00000332407
Original member Current member NCBI NM_145168.3 NP_660151.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145168.3Link to Protein Sequence:NP_660151.2Re-query CCDS DB by Nucleotide ID:NM_145168Re-query CCDS DB by Protein ID:NP_660151Link to BLAST:NP_660151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660151.2 393 Q8WUS8 393 100% 0 0

Chromosomal Locations for CCDS 42205.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81999111 82000224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 82000791 82000858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGACCCCAAAAGATCTCAAAAGGAAAGTGTCCTCATTACAGGAGGAAGTGGCTATTTTGGTTTTCGCC
TGGGCTGTGCCCTGAACCAAAATGGAGTCCATGTGATTCTGTTTGACATCAGCAGCCCTGCTCAAACCAT
TCCAGAAGGAATCAAGTTTATACAAGGAGACATCCGCCACCTGTCTGACGTAGAGAAAGCCTTCCAGGAT
GCAGACGTCACTTGTGTGTTCCATATTGCCTCTTATGGTATGTCAGGGCGGGAGCAACTCAATCGAAACC
TGATCAAAGAAGTCAACGTCAGGGGCACAGACAACATCCTCCAGGTTTGCCAAAGGAGAAGGGTGCCCAG
GTTAGTTTACACCAGCACTTTCAATGTCATCTTTGGAGGTCAAGTTATCAGAAATGGGGATGAATCTCTG
CCCTACCTGCCTCTTCACCTCCACCCTGATCACTACTCTCGGACAAAGTCAATTGCAGAGCAGAAGGTGC
TGGAGGCGAATGCTACACCCCTGGACAGAGGCGACGGTGTCTTAAGAACCTGCGCTCTGAGGCCAGCTGG
CATCTATGGGCCTGGAGAACAAAGACACCTTCCCAGGATAGTCAGCTACATCGAGAAGGGTCTGTTCAAG
TTTGTCTACGGGGACCCCAGGAGCCTGGTTGAGTTTGTCCACGTGGATAACTTGGTGCAGGCTCACATTC
TGGCCTCAGAAGCCCTGAGAGCTGACAAGGGCCATATTGCCTCTGGGCAGCCCTACTTCATCTCAGATGG
CAGACCCGTGAACAACTTTGAGTTCTTCCGGCCTCTGGTTGAGGGCCTGGGCTACACATTCCCGTCTACC
CGCCTGCCATTGACCTTGGTCTACTGCTTTGCTTTTCTAACAGAGATGGTTCACTTCATTTTGGGTCGAC
TCTACAACTTCCAGCCCTTCCTCACTCGCACTGAAGTTTACAAAACTGGTGTCACACATTATTTTAGCTT
AGAGAAAGCCAAGAAAGAGCTAGGTTATAAGGCTCAGCCATTTGACCTCCAGGAAGCAGTGGAATGGTTT
AAAGCCCATGGTCATGGCAGAAGTTCTGGAAGTCGTGACTCGGAGTGTTTTGTTTGGGATGGGCTATTGG
TCTTCCTCCTGATTATAGCAGTTCTCATGTGGCTGCCTTCTTCTGTGATTCTGTCACTGTGA

Translation (393 aa):
MDPKRSQKESVLITGGSGYFGFRLGCALNQNGVHVILFDISSPAQTIPEGIKFIQGDIRHLSDVEKAFQD
ADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVCQRRRVPRLVYTSTFNVIFGGQVIRNGDESL
PYLPLHLHPDHYSRTKSIAEQKVLEANATPLDRGDGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFK
FVYGDPRSLVEFVHVDNLVQAHILASEALRADKGHIASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPST
RLPLTLVYCFAFLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGYKAQPFDLQEAVEWF
KAHGHGRSSGSRDSECFVWDGLLVFLLIIAVLMWLPSSVILSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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