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Report for CCDS40639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40639.1 Public Mus musculus 9 Slc35f2 23 108 98 CCDS HistoryNCBI Gene:72022Re-query CCDS DB by CCDS ID:40639.1Re-query CCDS DB by GeneID:72022See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048670.9 ENSMUSP00000046528.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048670.9Link to Ensembl Protein Viewer:ENSMUSP00000046528.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048670Re-query CCDS DB by Protein ID:ENSMUSP00000046528
Original member Current member NCBI NM_028060.3 NP_082336.3 Accepted alive Link to Nucleotide Sequence:NM_028060.3Link to Protein Sequence:NP_082336.3Re-query CCDS DB by Nucleotide ID:NM_028060Re-query CCDS DB by Protein ID:NP_082336Link to BLAST:NP_082336.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082336.3 375 Q7TML3 375 100% 0 0

Chromosomal Locations for CCDS 40639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 53771785 53771894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53797838 53798013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53801011 53801138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53806618 53806777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53808046 53808202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53809686 53809738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53810875 53811029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53816783 53816971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGAGGCTGAGTCGCCGGCGAGTGCGGGGGCCAGCGAGCCCCGGGCGCTGGGTACGGTGGACAGTATCG
GCAGCCAGCTGAGCAGGATCCGACGCAAACTCTTCACCTGGGATATTTTGAAGACCATAGCTCTGGGCCA
GATGCTGTCCTTGTGTATTTGCGGCACGGCCATCACCAGCCAGTATTTGGCAGAAAAGTACAGAGTGAAC
ACGCCCATGCTGCAGAGTTTCATCAATTACTGCTTGCTCTTCCTGGTTTACACGTTGATGCTGGCGTTTC
AGTCAGGCAGTGATAACCTCCTGGAGATTTTGAGAAGAAAATGGTGGAAGTATACTCTCTTGGGGCTTGC
CGATGTGGAAGCCAATTATCTGATTGTCAGAGCATACCAGTACACGACTCTGACCAGTGTCCAGCTCTTG
GATTGCTTTGGGATTCCTGTGTTGATGGCTCTCTCCTGGTTTATTCTCCGGGCAAGATACAAAGTGATCC
ACTTCATTGCTGTGTTTGTCTGTCTGCTGGGTGTAGGGACCATGGTTGGTGCAGACATATTAGCTGGGCG
AGAAGATAATTCAGGGAGTGATGTTCTTATTGGTGACATCTTAGTCCTGCTTGGGGCTTCCCTGTATGCT
GTGTCTAACGTGTGTGAAGAATACATCGTGAAGAAGCTGAGCAGACAGGAATTTTTAGGAATGGTGGGAC
TATTTGGAACAATCATCAGCGGCATACAGCTATTGATTGTGGAATATAAAGACATTGCCCGGATTCAGTG
GGACTGGAAAATTGCCCTGTTATTTGTGGCATTTGCCCTCTGTATGTTTTGCCTGTACAGCTTCATGCCA
TTGGTGATTAAAGTCACGAGTGCCACTTCAGTCAACCTGGGCATCCTGACAGCTGACCTTTACAGCCTTT
TCTTTGGGCTTTTTTTATTCGAGTATAAGTTCTCAGGACTCTACATCCTGTCGTTCACAGTCATCATGGT
TGGCTTCATCTTGTACTGTTCCACCCCAACGCGCACGGTAGAGCCCCCAGAAAGCAGCGTGCCCCCTGTT
ACCAGCATCGGGATCGACAATTTGGGACTGAAGCTTGAGGAGAGTGGTCTCCCGGAGACCCACTCTGCAG
TCTTGTAG

Translation (375 aa):
MEAESPASAGASEPRALGTVDSIGSQLSRIRRKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYRVN
TPMLQSFINYCLLFLVYTLMLAFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLL
DCFGIPVLMALSWFILRARYKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYA
VSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVAFALCMFCLYSFMP
LVIKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCSTPTRTVEPPESSVPPV
TSIGIDNLGLKLEESGLPETHSAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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