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Report for CCDS40534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40534.1 Public Mus musculus 9 Cep126 23 108 98 CCDS HistoryNCBI Gene:234915Re-query CCDS DB by CCDS ID:40534.1Re-query CCDS DB by GeneID:234915See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037397.7 ENSMUSP00000042904.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037397.7Link to Ensembl Protein Viewer:ENSMUSP00000042904.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037397Re-query CCDS DB by Protein ID:ENSMUSP00000042904
Original member Current member NCBI NM_001045524.2 NP_001038989.1 Accepted alive Link to Nucleotide Sequence:NM_001045524.2Link to Protein Sequence:NP_001038989.1Re-query CCDS DB by Nucleotide ID:NM_001045524Re-query CCDS DB by Protein ID:NP_001038989Link to BLAST:NP_001038989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038989.1 1103 Q0VBV7 1103 100% 0 0

Chromosomal Locations for CCDS 40534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 8076884 8076946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8079495 8079559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8087228 8087425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8092244 8092316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8095214 8095326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8099732 8101841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8103318 8103516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8112080 8112191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8120642 8120787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8130196 8130315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8134098 8134210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3312 nt):
ATGCTGGCGGGCAGGCCCGGAGCCCAGAGCGCAGGCGCAGGCGTGGGCGCCGGACCCCCAGACGCGCCGG
GCGCCCGTGACGGCGGCGGTCGGCCGCGACCCGGCGCTTACCTAGATATGAAAATCCATCTTGAGAAAAA
TTTAGAAGAAGAACGCCAGATGCTACTACAGCAACAAAAACTATGTCGGAATCGAGCACGTAAATATTTC
ATGGAGTCAAACCGGAGAAGAAAAGCTTTCGAAGAGAAACGCCAAAAACAAGAAGAAAGAGAATATCAAA
TTAGAGAACGGATCCTGCAGCAGAGGAAGCAAAAGTTTGAAGAAGTTACTGAAAAATTCCAGCGTGCCCA
CGTTCCTGTTTCTCAGAGAAGGAGAGCAGTTTTTCAAAATCCAGTTCCTCCATTAGAAGAGGCCCTAAAA
CAAATTCAAGAGTCCAACTTAAAGTCAGAAGTAAACATTCCTCTTTTCCACAGGCCAGCAACAAATTGGC
GAGCTATAGATTCTGCCTTGCCTTCAACATTGTCAAAAAATGATCACAAGCATCAAAAACATCTCGTACG
CAGAATTAACCGTAATAAAGAAATGAAGGAAAACAACATAGCAAACCTAGCTACTAACAAAAATGTGTTC
CAGCTTAAACTGGAGGAGACACAGAAACTCCTAGAGGATCAACATTTAAGTGATTTGCAAAAATTTTGTG
ATGAAGTCAATCAGATAACCAATTCTGAAACTCTCTCAAGTATAGACAGTCTTGAGGCTGGAGAGCGTGA
AGAAATATACATCACACTTAGTATGAAGCCTTCCACGTCAACCCAGCAGAACTCTGTTCCCCTTCAGTCA
GCAAATCTACAAGCAGCTCATTTAGACTGCTTTGATGAAGATAAACTGTCATTCTCTAAAACTCAGCATA
TAAACAATTGGCTTACAAACTTAGATGCTCAAAATAGTCAGCCTGTTGCATCTTTTTCAGATATTTTAAT
TAAATCTAATGTTCTGCCCTCGTGGGAATGTTTAAATAGTAAAGAACAAAATCCACCTGCTTTGAGCAGA
ACTGTGGGAAGAACCACAAGAACTACTAGTGACTCAATGGTCTTTGTGTGCAGTCCATCCGTAGTTGCAC
TAGATAAAAAAGGAGAAAACACTGCTGAAAGCAATGTTGTGAGAGCAAGTGATCCCACTGAAGGAGCAGT
CCAAAGGGAGAGGCCGGCACAAATGGAGAGCCCAACGTTTAAAGTCAGTCGAGCCTGGACTACTGCAGAA
TCTCTAACCCAGGAAACAGCTTCATTTTCCGTCCAAGAGAGGCCTTCTGAGTTAACTTGGGAAAGCAGAA
CTGCTTCGATTCCTGCTTCATCTGTAACGGTTTTATCACCTAATTTACAGGCAGGTGGGCCTTTAGCAGA
GAACAACACACAGATAAAAGAAATTGACCCTGTGCAGTGCTCTGATAAGTTAGATGAATTGAAAAATATG
GAACATGAAAGGATAAACCATCTTAACTGTAATAAAGAAAAATATTTATTTTCACCCAATTTTCAGACCA
CCTGTGCACTTCAAAATTCTAATTCAAATGATAGAAAACAAAAAGAGAGTGGCCCATCAGCAGCACTGTG
TAACAACCCTCCTGACTGTGACTTGCCAGAGCAGCACAGCATAAAACACAGTGTCCATGAACAAAATGGG
GTGCGGCTGCTTAAGAGTATATTAAAGAAAGAATCCAGATATGAACATAATTATTTGAGAGCATTAGTTA
TGAAACAAGGTTTTAAGTTTAGACACCAAAAGGCAGAAACTGTTAGAGATAGTATTGAATTAACAAAACA
GAAAGGGAAAGGTGCAGAAATATCAAAGACTAGTAAAAAACTGCGGTGGTTTGATGAAAGTGCTAACTTA
GAAAATGCTGTAGATGATTGCCACCCAGTGAGGAACAGAGCAGGAATGGCTCCACGGTGGTTACAGCGCT
GTCACACCAACAGTGGCACCTACAACCTGACAAGTATTCCTGAGTGTCCTGTACATTCTGCTGCTGGAAA
GAAAGCCAAGGCTGATTCTGTCCCAGAAAATGCTACTGATTTAGGAAGATATGAAATAGACAGTGTGCCT
TTGAACTCTTCTGTATCTTTAGGCTTTAGCTTTGCCAAACAAGCCTGGTCGGCCTGCAGAAGAGGAGAGA
GCAAAGCCCCTGTACATGCTAGTGACTCTAAGACTCAAAAGACTAAGCCTCAGAGAGGAGTAAAATTCAC
TAGAAGAACAGGGTCTTCAAAGGTCCAGAAAGGACTTGTGCAGAACAGAAAACCCACTGTCAGCCAGCCA
CAAACTTCAAGCAAAGCCAACACAGTGGCCCAAACTCAGGGTAAACTAATTATAACTCATCCTCCACCTA
AACCGCCAACAAACATTAAAAGTGGTAAAAATATGCAAGTGTCTCCAGGTCAATCAGCCATACCTGAACA
TTCTCAAAATGTCATGACACAGAGCTGTTTAAGTCCAGCATCTGTGCTTCCAACAGAGTACCATTTGAAC
CAGGGGACTCAAGAAAGTAGTCTCCCGTTCTCAGACACCTGTTCTAACCTCCCTGCTGTGAGTCCAGCTC
TACCAACTCCTTACTCTTCTGAGTGCCAAACCTTAGCAAAAGCCAATTCAAATGGCACAGCTTTCCTGAA
AGACGGAGCAGTATATTGTACCCATCGAAGTCCTGTTTGTGAAGAAAGCTACCAGTCTTTCACTCATAGG
AATACTGAAGAAGAATCCATTCTCCCATGGAGAAGAAGAATCAATGGACACCAAAATGAGAGAACCACTG
ATTCTACTGTTACAAGAAGAAAGCAAATTGTTGAAAATAAATGGAAAAGGCTGTTAGAACAGAAAAGGAA
AACCTCTGGATCTATAGGAATGAAGTACACCGAGCAAATAACTCATTTTGGACAAAATGTCCCACCAAGT
ACAACTGAACAAATACAAGCTCCAAGAGGTGTCAAGACTGAAGAAGTTTCAGATAGTACTTCTGAGTTTT
TGGTGGCAGAAAACCTCATGAATTCTTCAGTGCCTGAAGATGAAATTCTGACTGCCATAAACAGCAAGCA
TCTACAGAAACCAAATCTGTCCCAACCAACCAATGTCTGTGCCCTGTCAGCTGAAGAGCAGAAGATCCTG
AAGTCACTCCATCACCTCGATGAAAGGCTATACTATGTACAAGAAGCAATTCGCAAAAACCCTTCCATCA
AAAATACTTTACAATTAATACCACTTCTGAGCAGCCAGCCAAGGGCAAGTCTGTCTCCTGATGTTGGATC
CACAGTGCAAAGAAAATACTGA

Translation (1103 aa):
MLAGRPGAQSAGAGVGAGPPDAPGARDGGGRPRPGAYLDMKIHLEKNLEEERQMLLQQQKLCRNRARKYF
MESNRRRKAFEEKRQKQEEREYQIRERILQQRKQKFEEVTEKFQRAHVPVSQRRRAVFQNPVPPLEEALK
QIQESNLKSEVNIPLFHRPATNWRAIDSALPSTLSKNDHKHQKHLVRRINRNKEMKENNIANLATNKNVF
QLKLEETQKLLEDQHLSDLQKFCDEVNQITNSETLSSIDSLEAGEREEIYITLSMKPSTSTQQNSVPLQS
ANLQAAHLDCFDEDKLSFSKTQHINNWLTNLDAQNSQPVASFSDILIKSNVLPSWECLNSKEQNPPALSR
TVGRTTRTTSDSMVFVCSPSVVALDKKGENTAESNVVRASDPTEGAVQRERPAQMESPTFKVSRAWTTAE
SLTQETASFSVQERPSELTWESRTASIPASSVTVLSPNLQAGGPLAENNTQIKEIDPVQCSDKLDELKNM
EHERINHLNCNKEKYLFSPNFQTTCALQNSNSNDRKQKESGPSAALCNNPPDCDLPEQHSIKHSVHEQNG
VRLLKSILKKESRYEHNYLRALVMKQGFKFRHQKAETVRDSIELTKQKGKGAEISKTSKKLRWFDESANL
ENAVDDCHPVRNRAGMAPRWLQRCHTNSGTYNLTSIPECPVHSAAGKKAKADSVPENATDLGRYEIDSVP
LNSSVSLGFSFAKQAWSACRRGESKAPVHASDSKTQKTKPQRGVKFTRRTGSSKVQKGLVQNRKPTVSQP
QTSSKANTVAQTQGKLIITHPPPKPPTNIKSGKNMQVSPGQSAIPEHSQNVMTQSCLSPASVLPTEYHLN
QGTQESSLPFSDTCSNLPAVSPALPTPYSSECQTLAKANSNGTAFLKDGAVYCTHRSPVCEESYQSFTHR
NTEEESILPWRRRINGHQNERTTDSTVTRRKQIVENKWKRLLEQKRKTSGSIGMKYTEQITHFGQNVPPS
TTEQIQAPRGVKTEEVSDSTSEFLVAENLMNSSVPEDEILTAINSKHLQKPNLSQPTNVCALSAEEQKIL
KSLHHLDERLYYVQEAIRKNPSIKNTLQLIPLLSSQPRASLSPDVGSTVQRKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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