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Report for CCDS40526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40526.1 Public Mus musculus 9 Gucy1a2 23 108 98 CCDS HistoryNCBI Gene:234889Re-query CCDS DB by CCDS ID:40526.1Re-query CCDS DB by GeneID:234889See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115733.2 ENSMUSP00000111398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115733.2Link to Ensembl Protein Viewer:ENSMUSP00000111398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115733Re-query CCDS DB by Protein ID:ENSMUSP00000111398
Original member NCBI NM_001033322.2 NP_001028494.1 Updated not alive Link to Nucleotide Sequence:NM_001033322.2Link to Protein Sequence:NP_001028494.1Re-query CCDS DB by Nucleotide ID:NM_001033322Re-query CCDS DB by Protein ID:NP_001028494
Current member NCBI NM_001033322.3 NP_001028494.1 Accepted alive Link to Nucleotide Sequence:NM_001033322.3Link to Protein Sequence:NP_001028494.1Re-query CCDS DB by Nucleotide ID:NM_001033322Re-query CCDS DB by Protein ID:NP_001028494Link to BLAST:NP_001028494.1

Chromosomal Locations for CCDS 40526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 3532803 3533099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3579518 3579579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3582579 3582700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3634439 3635157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3759396 3759881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3797238 3797381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3865358 3865512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3894504 3894711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGTCTCGAAGAAAGATTTCATCCGAGTCTTTCAGCTCTTTGAGCTCTGACTACCTGGAGACCAGCCCGG
AGGAGGAAGGGGAGTGCCCATTGTCCAGGCTCTGCTGGAATGGCAGCCGGAGCCCGCCAGGGCCACCTGG
CTCTAGAGAGGCCGCTAAGGCTGCCACTTCGGCCCCCGCTGCCTCTGCCGCCGCGGCCTCTGCTGCAGTC
GCCGCGGAGTACAAGAGAGCCCAACGCCGCGGAAGGGTCAACCTGGACTCACTAGGCGAAAGCATCAGCC
TCCTGACGGCGCCCTTGCCTCAGACGATACACATGACTCTCAAGAGGACATTGCAGTATTATGAACACCA
AGTTATTGGTTATAGGGATGCAGAAAAGAATTTCCACAATATCTCTAAAAGATGCTCCTATGCAGACCAT
TCCAACAAAGAGGAAATTGAAGATGTCTCAGGAATTCTTCAGTGCACTGCTAATGTACTCGGACTGCAGT
TCCAAGAAATTCAAGAAAGATTTGGTGAGGAATTCTTTAAGATATGCTTTGATGAGAATGAAAGAGTCCT
TCGAGCTGTGGGCAGCACATTGCAGGACTTCTTCAATGGCTTTGATGCATTGTTAGAACACATTAGGACT
TCTTTTGGGAAACAGGCCACTCTAGAGTCATCATCTTTCCTATGCAAAGAGCTTCCTGAAGGTACTCTCA
TGCTCCATTACTTCCACCCTCACCATACGGTGGGCTTTGCAATGCTGGGAATGATTAAGGCTGCAGGAAA
GAGAATCTATCACTTAAATGTGGAAGTTGAACAAATTGAAAATGAGAAACTCTGCTTTGATGGTTCAAAC
CCAAGCAATTGCAGCTGTCTTACTTTCCTTATCAAAGAATGTGAAACTACTCAGATCACAAAGGACAATC
CACAAGGTACTTCCCAAGTTCCTGCAGACCTCAGAATCAGCATCAACACCTTCTGCAGAGCCTTCCCCTT
CCATTTGATGTTTGACTCTAACATGGTGGTCCTTCAGCTTGGGGAGGGCCTACGGAAACAACTTCGATAT
GACACTCACAGAGCACTGAAGTTTGAGGACTGTTTTGAGATCGTCTCTCCAATGATTAATGCCACCTTTG
ATAGAGTCTTGCTACGATTGTCCACTCCATTTGTTATAAGGACCAAGCCCGAAGCTTCTGGTACTGAGAA
TGAAGATAAGGTGATGGAAATCAAAGGACAAATGATCCATGTCCCAGAATCAAGTGCCATTTTGTTTTTG
GGATCTCCATGTGTGGACAAGTTGGATGAACTGATGGGCCGAGGACTGCATCTCTCAGACATCCCTATTC
ATGATGCCACCCGAGATGTAATTTTAGTTGGAGAGCAAGCCAAGGCCCAGGATGGCTTGAAGAAGAGGAT
GGATAAATTAAAGGCCACATTAGAAAGAACTCACCAGGCCCTGGAAGAAGAAAAAAAGAAGACAGTGGAT
CTGCTGTATTCCATTTTCCCTGGTGATGTAGCCCAGCAGTTGTGGCAAGGGCAGCAAGTACAGGCCAGAA
AGTTTGATGATGTCACCATGCTCTTCTCTGACATTGTGGGCTTTACAGCCATATGTGCTCAGTGTACTCC
CATGCAGGTGATCAGCATGCTCAATGAACTCTACACAAGATTTGATCACCAGTGTGGCCTTTTGGATATT
TACAAGGTGGAAACAATAGGGGACGCATACTGTGTGGCATCAGGACTGCACAGGAAAAGCCTATGCCATG
CAAAGCCCATTGCTCTGATGGCCTTAAAGATGATGGAGCTTTCAGAAGAAGTTCTGACTCCCGATGGAAA
AGCAATTCAGATGCGGATAGGCATTCACTCAGGCTCTGTGCTGGCTGGTGTGGTCGGAGTACGAATGCCA
CGATATTGTCTTTTTGGAAACAATGTCACTCTGGCAAGCAAATTTGAATCTGGAAGTCATCCTCGGCGTA
TCAATGTCAGCCCTACTACTTACCAATTACTAAAACGAGAAGACAGTTTCACATTTATTCCTCGTTCTCG
AGAAGAACTTCCAGACAACTTTCCGAAGGAAATTCCTGGGGTCTGCTATTTCCTGGAGTTAAGGACTGAC
CCAAAGCCACCAAAGCCATCCCTATCTTCATCGAGAATAAAAAAGGTTTCCTACAATATTGGCACAATGT
TCCTCCGGGAAACAAGCCTCTGA

Translation (730 aa):
MSRRKISSESFSSLSSDYLETSPEEEGECPLSRLCWNGSRSPPGPPGSREAAKAATSAPAASAAAASAAV
AAEYKRAQRRGRVNLDSLGESISLLTAPLPQTIHMTLKRTLQYYEHQVIGYRDAEKNFHNISKRCSYADH
SNKEEIEDVSGILQCTANVLGLQFQEIQERFGEEFFKICFDENERVLRAVGSTLQDFFNGFDALLEHIRT
SFGKQATLESSSFLCKELPEGTLMLHYFHPHHTVGFAMLGMIKAAGKRIYHLNVEVEQIENEKLCFDGSN
PSNCSCLTFLIKECETTQITKDNPQGTSQVPADLRISINTFCRAFPFHLMFDSNMVVLQLGEGLRKQLRY
DTHRALKFEDCFEIVSPMINATFDRVLLRLSTPFVIRTKPEASGTENEDKVMEIKGQMIHVPESSAILFL
GSPCVDKLDELMGRGLHLSDIPIHDATRDVILVGEQAKAQDGLKKRMDKLKATLERTHQALEEEKKKTVD
LLYSIFPGDVAQQLWQGQQVQARKFDDVTMLFSDIVGFTAICAQCTPMQVISMLNELYTRFDHQCGLLDI
YKVETIGDAYCVASGLHRKSLCHAKPIALMALKMMELSEEVLTPDGKAIQMRIGIHSGSVLAGVVGVRMP
RYCLFGNNVTLASKFESGSHPRRINVSPTTYQLLKREDSFTFIPRSREELPDNFPKEIPGVCYFLELRTD
PKPPKPSLSSSRIKKVSYNIGTMFLRETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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