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Report for CCDS40040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40040.1 Public Mus musculus 7 Arhgef17 23 108 98 CCDS HistoryNCBI Gene:207212Re-query CCDS DB by CCDS ID:40040.1Re-query CCDS DB by GeneID:207212See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107032.2 ENSMUSP00000102647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107032.2Link to Ensembl Protein Viewer:ENSMUSP00000102647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107032Re-query CCDS DB by Protein ID:ENSMUSP00000102647
Original member Current member NCBI NM_001081116.1 NP_001074585.1 Accepted alive Link to Nucleotide Sequence:NM_001081116.1Link to Protein Sequence:NP_001074585.1Re-query CCDS DB by Nucleotide ID:NM_001081116Re-query CCDS DB by Protein ID:NP_001074585Link to BLAST:NP_001074585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074585.1 2057 Q80U35-1 2057 100% 0 0

Chromosomal Locations for CCDS 40040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100873400 100873596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100876413 100876682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100876766 100876940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100877708 100877856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100878096 100878163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100878494 100878580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100878805 100879054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100879452 100879756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100879933 100880132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100880601 100880674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881179 100881392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881693 100881811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100882220 100882305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100882410 100882519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100882773 100882823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100883116 100883292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100883470 100883562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100883768 100883884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885677 100885859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100890421 100890498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100928569 100931739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6174 nt):
ATGGCGGACGGGTCACCTCGACCCCCACTTTATCGCAGCGTCTCGTTTAAACTGCTGGAGCGCTGGAGCG
GCGGACCGGGGCCGAGGGAGGAGGACGCGGACACCCCTGGGTTGCGGCGCCGAGCTTCGTGCCGGCCAGC
CGCGGCAGTCCCGGGCCAGCCCTCCCGGCGCGTGTCCAAGCTGGCGTCGGGGCCCCCGGCCGCCCCCGCG
CAGCCGCGCCCGCTCCGCAGCCTCTCGCCATCGGTGCGCCAGCTCTCCCGGCGCTTCGACGCGGCGGGTC
TGGACGACGACTCCACTGGTACCCGGGACGGGGGCTGCTCCTCCGGCACCACAGAAGAAGCTGCGGAAGG
CTCTGAACGTGGGGCCTGGCCCAGCGTCACAGAGATGCGCAAACTCTTCGGCGGTCCGAGCTCCAGACGA
CCCAGTATGGACTCTGAGGCCCTGGGGTCGACCAGCCCCGACAGAGTTTCGTGGGAGCCCCCAACTCGCG
ATCCCCGGCAACCTCCGACGCCACCTCCTCGAACGTGCTTTCCTCTGGCTGGCCTGCGTTCTGCGCGGCC
GCTGTCCGGGCCCGGGATCGAGGGGAGGCGACGTCGGCAGCACCAGCAACAGGAGCGGGCGCAGCGTCCG
GCGGATGGTTTACATTCTTGGCATAGCTTCTCCCAACCGCAGGCCGGGGCCCGGGCCTCCTCCTCCTCCT
CCATTGCCTCCTCCTATCCTGTCAGCCGCAGCCGGGCTGCTAGTTCCAGCGAGGAGGAAGAGGAGGGACC
GCAGTCGCAGCTTGGGCCTCAGAGTCCGGCCTACCTCGGCGGCCACTCTTCGGGCAGTGACGAGGACCCA
AATGGTGAGGATGGCCGTCGCTGGAGAGGGAGAGGTCTCCGGCCTGGACGCTCTCAGTTGGTTCACGGCT
GCAGCCAGGACAGTGACGAGCTAAATCCGGGAGGCTTGGGATCAGCGGGGGGTGTCGGGAGCCCCGAACC
TCCGACGTCTCCAAGAACCTCAATGGATGAGTGGGGTACTGGTACACAGCCATGCCTCCCAGGTCCCCAA
GAGAGCTTAAGGCCTATGTCCGACACTGGGGGTGCACCTTTCCGTGTGGCTAAGGTGAGCTTTCCTGCGT
ACCTGGCCAGCCCAGCTGGCTCCCGAGGAAGTAGTCGCTATTCCAGCACAGAGACCCTCAAAGATGACGA
CCTATGGTCAAGCCGTAGTTCTGTGGGCTGGGGTGTATATCGATCCCCAAGTTTTGGAACTGGAGATGGG
CTTCTTCTGCGGCCCCAGACGAGGTCCCGCAGTAAGGGACCTGTAGGCACTGCCAGGCCGCTGAGGGATG
GAGGACTGGACCTAGATAAGAACCGACAACGAAAGTCCCTATCGAATCCAGATATCGCCTCTGAAACCCT
GACGCTGCTCAGTTTCCTTCGTTCAGACCTTTCAGAACTGAGGGTCCGAAAGCCCAGTGGGGGCCCTGGG
AACAGGCCCCTAGATGGCAGAGACTCACCATCAGCAGGTAGCCCAATGGAACAATCGGAGTCCACACTGT
CTCAAAGTCCAACGTCACCCACCACCCGGCCCACCCTCAAGGACCTGACAGCTACCCTACGCAGAGCAAA
GTCATTCAGCTGTTCGGAAAAGCCCATGGCCCGGCGCCTGCTCCGCACCAGTGCCTTGAAGCCTAGCTCC
TCAGAGCTCCTACTGGCAGGTTCTGGGGCAGAGGAAGACCCATTGCCACTCGTGGTCCAGGATCAGTATG
TACAGGAAGCCCGTCAGGTTTTTGAGAAGATACAGCGAATGGGTGCACAGCAGGACGATGGAAATGATGT
CTGCCCTACAAGTCCTGACTGGGCAGGGGATATGACCCAAGGGCATCGGTCTCAGGAGGAGCTCTCTGGC
CCTGAGTCCAACCTGACGGATGAGGGCATTGGAGCAGACCCTGAACCTCTTGGTGCTGCCTTTTGCAGCT
TAGATCCTGCAGGAGTGTGGCGACCCCTTTCCTCTACTTCAGCGCAGACAAACCACCACCTTGGGGCCGG
GACAGAAGACAGCCTGGGTGGGAGGGCCCTTGTGTCTCCTGAGACCCCTCCAACTCCAGGTGCCCTCCGC
AGGAGACGAAAAGTGCCACCTTCAGGCCCTAATGGAACTGAACTAAGTAATGGGGAGGCTAGTGAGGCCT
ACAGGTCCCTGAGTGACCCTATTCCACAGCGTCATCGGGCTGCCACCTCTGAGGAGCCCTCAGGGTTCTC
TGTGGACAGCAATCTTCTGGGCTCGCTGAACTCTAAGACAGGGCTTCCAGTGACCCCAGCTATGGATGAG
GGCCTGACCAGCGGCCACAGTGACTGGTCTGTGGTTAGCGAAGAGAACAAGGACTATCAGGAAGTCATTC
AGAGTATCGTTCAGGGGCCTGGTGCCTTGGGGCGTATGGGAGAAGACAGGATTGCTGGCAAGACCCCCAA
GAAGAAATCTCTGAGTGACCCTAGTCGCCGTGGGGAGTTGACTGGGCCTGGATTTGAGGGCCCAGGAGGG
GAGCCCATTCGAGAAGTGGAGCCCATGCTGCCTCCGTCCAGCAGTGAACCTATCCTTGCAGAGCAGTGGA
CAGAGCCGGAAGACCCTGCTCCTGCCAGGGGCAGGGCACAGTCAGAGAGGTCCCTACCTGCCCCACCTGC
CTCCTCCACTGCCCACCATGACTTCCATCTTGACCCCAAGCTGACCAGTGTTCTCTCCCCTCGGCTCACC
CGTCGAGGCTCCAAGAAGCGCCCAGCCCGGAGCAGTCACCAGGAGCTTCGGAGAGAGGAGGGCAACCAGG
ACCAGACTGGTAGCTTGACACAAACTCGGTCTTCCTCCAAACATGTTCGCCACGCCAGTGTGCCTGCCAC
CTTTACACCTATTGTGGTACCCGAGCCTGCGATGTCTGTGGGACCCCCCGTGGCTGCGCCAGAGCCTGTG
GGCTTTCCTGTTAGAGGCCATCCCGCCTTGCAGGCACCATCACTTGAGGATGTGACTAAACGGTACATGC
TGACCCTTCACTCTGGTGACGTTCCTGCCCCAGGTCCTGTGGACCTACCCTGCTTGCCTCCTTCTGCACC
GCCCTCCACTGAGACCAAGCCCTCTGGGGCTGCCAGGGCAACTCCAGATGAGCCAGCCCCAGCGAGCAAG
TGCTGTAGCAAGCCACAAGTGGACATGAGGAAGCACGTGACCATGACCCTGCTGGACACAGAGCAGTCGT
ATGTGGAGTCACTGCGCACCCTGATGCAGGGCTACATGCAGCCACTGAAGCAGCCGGAGAACTCCTTGCT
GTGCGACCCGTCTCTGGTGGACGAGATCTTCGACCAGATCCCCGAGCTCCTGGAGCACCATGAGCAGTTC
CTGGAGCAGGTGCGGCACTGCGTGCAAACGTGGCACGCCCAGCAGAAGGTGGGAGCCCTGCTCGTCCAGT
CGTTTTCCAAAGACGTCTTGGTGAACATCTATTCGGCCTATATTGATAACTTCCTCAATGCAAAGGATGC
TGTGCGTGTAGCTAAGGAGGCCAGGCCAGCCTTTCTCAAGTTCTTGGAGCAAAGCATGCGTGAGAACAAG
GAAAAGCAGGCGCTGTCCGACCTCATGATCAAGCCTGTGCAGAGAATCCCACGCTATGAGCTTCTGGTGA
AGGACCTTCTGAAGCACACACCGGAAGACCATCCAGACCACCCACTGCTGCTCGATGCTCAGCGCAACAT
CAAGCAGGTGGCTGAGCGCATCAACAAGGGTGTGCGGAGCGCTGAGGAGGCCGAGCGGCATGCCCGCGTG
CTTCAGGAGATCGAAGCCCACATCGAGGGCATGGAGGATCTCCAGGCCCCCCTGCGGCGGTTCCTGAGGC
AGGAGATGGTTATTGAAGTGAAGGCAATTGGAGGCAAGAAGGACCGATCCCTCTTCCTGTTCACAGACCT
CATTGTCTGTACCACCCTGAAACGAAAGTCGGGCTCGCTGAGGCGCAGCTCCATGAGCCTGTACACAGCA
GCCAGCGTCATTGATACAGCCAGCAAATACAAGATGCTGTGGAAGCTGCCACTGGAAGACACAGACATCA
TCAAGGGGGCGTCTCAAGCCACCAATCGGGAGACCATCCAAAAAGCCATCAGCCGCCTGGATGAGGACCT
GGCCACCCTGGGCCAAATGAGCAAGCTCTCCGAGAGCCTCGGCTTCCCCCACCAGAGTCTAGACGATGCA
CTGAGGGATCTCTCGGCCGCCATGCACCGGGACCTGTCAGAAAAGCAGGCGCTATGCTGCTCCCTGGCCT
TCCCGCCCACCAAGCTGGAGCTGTGCGCCACCCGGCCCGAGGGCACCGACTCCTACATCTTTGAGTTTCC
CCACCCGGATGCCCGCCTGGGCTTTGAGCAGGCCTTTGATGAGGCCAAGAGGAAGCTGGCATCCAGTAAA
AGCTGTCTAGACCCTGAGTTCCTGAAGGCCATCCCTATCATGAAGACTCGCAGTGGCATGCAGTTTTCGT
GTGCTGCCCCCACCTTCAGCAGCTGCCCAGAGCCGGCGCCAGAGGTCTGGGTGTGCAACAGTGATGGCTA
CGTAGGTCAGGTGTGCCTGCTAAGCTTGAGGGCGGAACCAGATGTGGAGGCCTGCATCGCTGTTTGTTCT
GCCCGCATTCTCTGTATCGGAGCGGTGCCAGGCCTGCAACCACGCTGCCCGCGAGAGCAGCCAGAGCCCT
TGAGAAACCCCCCAGAGACCACACTGGAATCCACTGGGCCAGAGCTAGATGTTGAGGCCACAGCTGAGGA
GGAGGCAGCGACGACGCTGGCTGAGCCAGGGCCTCAGCCTTGCCTGCACATTTCCATCTCAGGATCGGGC
CTGGAGATGGAGCCAGGCCCTGCTAAGGGTGACCCCCAGCCCGAGTTGGTGCCCTTTGACAGCGACTCTG
ACGACGAATCTTCACCCAGCCCCTCCGGGACTCTACAGAGCCAAGCCAGCCAATCTACCATTTCCTCCAG
CTTTGGAAATGAAGAGACCCCAAGCTCCAAGGAAGCCACTGCAGAGACGACCAGCTCTGAGGAAGAGCAA
GAGCCTGGCTTCCTGTCACTCTCTGGCTCCTTTGGGCCAGGTGGTCCCTGTGGCACCAGCCCGATGGATG
GAAGAGCCCTTCGCCGCTCCAGCCGTGGCTCTTTCACAAGGGGCAGCCTTGAGGACCTGTTGAGTGTGGA
CCCTGAGGCCTACCAGAGTTCCGTGTGGCTGGGCACCGAGGATGGCTGTGTCCACGTCTACCAGTCCTCT
GATAGCATCCGTGATCGCAGGAACAGCATGAAGCTCCAGCACGCTGCCTCCGTGACCTGCATCCTGTATC
TGAATAACAAGGTGTTCGTGTCTTTGGCCAATGGAGAACTTGTAGTCTACCAAAGGGAAGCAGGGCGTTT
CTGGGATCCCCAGAACTTCAAATCGATGACCCTGGGTTCTCAGGGGAGCCCCATTACCAAGATGGTGTCT
GTGGGTGGACGACTGTGGTGTGGCTGCCAGAACCGGGTCCTTGTCCTGAGCCCTGACACATTGCAGCTGG
AGCACACATTCTACGTGGGGCAGGATTCCAGCCGAAGTGTGGCTTGCATGGTGGACTCCAGCCTGGGTGT
GTGGGTGACCTTGAAAGGTAGTGCCCATGTATGTCTCTATCATCCGGACACCTTTGAGCAACTGGCGGAG
GTAGATGTCACCCCTCCTGTGCACAGGATGCTGGCAGGCTCAGACGCCATCATCCGGCAGCACAAGGCAG
CCTGCCTGAGGATCACGGCGCTGCTGGTGTGTGCGGAGCTGCTGTGGGTGGGCACTAGTGCCGGGGTCGT
GCTGACTATACCCACCTCTCCAAGCACCGTCAGCTGCCCGCGAGCACCTCTCAGCCCAGCTGGCCTGTGC
CAGGGCCACACTGGCCATGTCCGCTTCCTGGCTGCAGTCCAGCTGCCTGAAGGCTTCAACCTTCTATGTT
CAACCCCACCGCCTCCCCCAGACACAGGCCCTGAGAAGCTGCCTTCCCTGGATCACCGGGACTCCCCTCG
GCGCCGAGGCCCCACCTCAGCCAGGCCTAAAATGCTGGTCATCAGTGGTGGTGATGGCTCTGAGGACTTC
CGACTCAGCAGCGGGGGTGGCGGCAGCAGCGAGACCGTGGGCCGAGATGACAGCACAAACCACCTACTCC
TGTGGAGGGTGTGA

Translation (2057 aa):
MADGSPRPPLYRSVSFKLLERWSGGPGPREEDADTPGLRRRASCRPAAAVPGQPSRRVSKLASGPPAAPA
QPRPLRSLSPSVRQLSRRFDAAGLDDDSTGTRDGGCSSGTTEEAAEGSERGAWPSVTEMRKLFGGPSSRR
PSMDSEALGSTSPDRVSWEPPTRDPRQPPTPPPRTCFPLAGLRSARPLSGPGIEGRRRRQHQQQERAQRP
ADGLHSWHSFSQPQAGARASSSSSIASSYPVSRSRAASSSEEEEEGPQSQLGPQSPAYLGGHSSGSDEDP
NGEDGRRWRGRGLRPGRSQLVHGCSQDSDELNPGGLGSAGGVGSPEPPTSPRTSMDEWGTGTQPCLPGPQ
ESLRPMSDTGGAPFRVAKVSFPAYLASPAGSRGSSRYSSTETLKDDDLWSSRSSVGWGVYRSPSFGTGDG
LLLRPQTRSRSKGPVGTARPLRDGGLDLDKNRQRKSLSNPDIASETLTLLSFLRSDLSELRVRKPSGGPG
NRPLDGRDSPSAGSPMEQSESTLSQSPTSPTTRPTLKDLTATLRRAKSFSCSEKPMARRLLRTSALKPSS
SELLLAGSGAEEDPLPLVVQDQYVQEARQVFEKIQRMGAQQDDGNDVCPTSPDWAGDMTQGHRSQEELSG
PESNLTDEGIGADPEPLGAAFCSLDPAGVWRPLSSTSAQTNHHLGAGTEDSLGGRALVSPETPPTPGALR
RRRKVPPSGPNGTELSNGEASEAYRSLSDPIPQRHRAATSEEPSGFSVDSNLLGSLNSKTGLPVTPAMDE
GLTSGHSDWSVVSEENKDYQEVIQSIVQGPGALGRMGEDRIAGKTPKKKSLSDPSRRGELTGPGFEGPGG
EPIREVEPMLPPSSSEPILAEQWTEPEDPAPARGRAQSERSLPAPPASSTAHHDFHLDPKLTSVLSPRLT
RRGSKKRPARSSHQELRREEGNQDQTGSLTQTRSSSKHVRHASVPATFTPIVVPEPAMSVGPPVAAPEPV
GFPVRGHPALQAPSLEDVTKRYMLTLHSGDVPAPGPVDLPCLPPSAPPSTETKPSGAARATPDEPAPASK
CCSKPQVDMRKHVTMTLLDTEQSYVESLRTLMQGYMQPLKQPENSLLCDPSLVDEIFDQIPELLEHHEQF
LEQVRHCVQTWHAQQKVGALLVQSFSKDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENK
EKQALSDLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLDAQRNIKQVAERINKGVRSAEEAERHARV
LQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTA
ASVIDTASKYKMLWKLPLEDTDIIKGASQATNRETIQKAISRLDEDLATLGQMSKLSESLGFPHQSLDDA
LRDLSAAMHRDLSEKQALCCSLAFPPTKLELCATRPEGTDSYIFEFPHPDARLGFEQAFDEAKRKLASSK
SCLDPEFLKAIPIMKTRSGMQFSCAAPTFSSCPEPAPEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCS
ARILCIGAVPGLQPRCPREQPEPLRNPPETTLESTGPELDVEATAEEEAATTLAEPGPQPCLHISISGSG
LEMEPGPAKGDPQPELVPFDSDSDDESSPSPSGTLQSQASQSTISSSFGNEETPSSKEATAETTSSEEEQ
EPGFLSLSGSFGPGGPCGTSPMDGRALRRSSRGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVYQSS
DSIRDRRNSMKLQHAASVTCILYLNNKVFVSLANGELVVYQREAGRFWDPQNFKSMTLGSQGSPITKMVS
VGGRLWCGCQNRVLVLSPDTLQLEHTFYVGQDSSRSVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAE
VDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCAELLWVGTSAGVVLTIPTSPSTVSCPRAPLSPAGLC
QGHTGHVRFLAAVQLPEGFNLLCSTPPPPPDTGPEKLPSLDHRDSPRRRGPTSARPKMLVISGGDGSEDF
RLSSGGGGSSETVGRDDSTNHLLLWRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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