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Report for CCDS39727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39727.1 Public Mus musculus 7 Tarm1 23 108 98 CCDS HistoryNCBI Gene:245126Re-query CCDS DB by CCDS ID:39727.1Re-query CCDS DB by GeneID:245126See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203821.2 ENSMUSP00000145491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203821.2Link to Ensembl Protein Viewer:ENSMUSP00000145491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203821Re-query CCDS DB by Protein ID:ENSMUSP00000145491
Original member Current member NCBI NM_177363.4 NP_796337.1 Accepted alive Link to Nucleotide Sequence:NM_177363.4Link to Protein Sequence:NP_796337.1Re-query CCDS DB by Nucleotide ID:NM_177363Re-query CCDS DB by Protein ID:NP_796337Link to BLAST:NP_796337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796337.1 288 B6A8R8 288 100% 0 0

Chromosomal Locations for CCDS 39727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3489079 3489221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3495926 3495991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3496675 3496971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3497425 3497715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3498196 3498231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3502432 3502465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGATCTCTAGGCTCCTTTCCCTTCTCTGCCTCCGGCTGTGTGTTGGGCAAACAGACATTCCTGAAAATG
GGTCTCCTCCCAAGCCCAGCCTCAGTGCCTGGCCCAGCACAGTGCTTCCCACCAAGAGCCACGTGACAAT
GCAATGTAAGAGCCCCACCCCGAGTAAATACTTCATCCTCAAAAAGGAAGGTTTCGCTTTGAATTCTGTG
AAGCCATATAATTTGACAGAGGAGACGGCTGATTTTCATTTCACCGACCTACGACAGAATGATGGCGGAC
ACTACACCTGTGAATACTATAGCAAATGGCCCCATGACACACCGTCACACCCCAGCAATGCCCTTTTCTT
GTTGGTCACAGGGTACTTACCTCAGCCCTCCTTTCAAGCCCACCACCGGGGTACAGTGACTGCAGGAAGC
AAGGTGACTTTGCAGTGCCAGAAAGCAGGCAGTGTCCTCGGACCCGTAAAGTTTGCGTTACTGAAGGTGG
GACACTCAACTCCTGTGCAGACAAGGAGCTCAACAGGAATGGTATCAGACTTCTCTCTTCAGAATGTGAC
AGCCAGAGACTCGGGGGAATACAGCTGTGTTTACTATCAGGCAAAGGCTCCCTATCGGGCCTCAGGGCCC
AGCAATCTCCTTGAGATCTCTGTGATAGACAACCATCTGCCTCAAGATCTTGCTGCCTCGACTTTCCCAC
CGCAACTGACAGCAACCTCACCCAAGACCCCGGGTACAATGACAGAAGGCTACACTGTGGATAATCTCAT
CCGGGTCGGTGTGGCTGCTGCAATCCTGCTAATAGTGGGAGGCTTCCTGGTTGAAGCCTGGCACAGTGAG
CGGCTGTCTCCAAATAAACCCTGGTAA

Translation (288 aa):
MISRLLSLLCLRLCVGQTDIPENGSPPKPSLSAWPSTVLPTKSHVTMQCKSPTPSKYFILKKEGFALNSV
KPYNLTEETADFHFTDLRQNDGGHYTCEYYSKWPHDTPSHPSNALFLLVTGYLPQPSFQAHHRGTVTAGS
KVTLQCQKAGSVLGPVKFALLKVGHSTPVQTRSSTGMVSDFSLQNVTARDSGEYSCVYYQAKAPYRASGP
SNLLEISVIDNHLPQDLAASTFPPQLTATSPKTPGTMTEGYTVDNLIRVGVAAAILLIVGGFLVEAWHSE
RLSPNKPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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