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Report for CCDS39619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39619.1 Public Mus musculus 6 Mug2 23 108 98 CCDS HistoryNCBI Gene:17837Re-query CCDS DB by CCDS ID:39619.1Re-query CCDS DB by GeneID:17837See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081777.7 ENSMUSP00000080469.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081777.7Link to Ensembl Protein Viewer:ENSMUSP00000080469.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081777Re-query CCDS DB by Protein ID:ENSMUSP00000080469
Original member Current member NCBI NM_008646.3 NP_032672.2 Accepted alive Link to Nucleotide Sequence:NM_008646.3Link to Protein Sequence:NP_032672.2Re-query CCDS DB by Nucleotide ID:NM_008646Re-query CCDS DB by Protein ID:NP_032672Link to BLAST:NP_032672.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032672.2 1451 P28666 1451 100% 0 0

Chromosomal Locations for CCDS 39619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122006859 122006944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122008306 122008489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122009282 122009441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122009588 122009640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122023027 122023047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122023305 122023473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122023855 122023939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122024948 122025035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122035977 122036094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122036240 122036349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122037031 122037192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122040542 122040769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122047435 122047498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122049637 122049785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122051726 122051875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122058958 122059116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122059756 122059831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122063555 122063738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122070778 122071006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122071752 122071878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122072129 122072250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122072734 122072785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122074637 122074720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122075145 122075321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122075534 122075621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122077389 122077545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122078642 122078822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122079561 122079784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122081168 122081386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122081547 122081674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122082699 122082789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122083432 122083500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122084317 122084419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122085468 122085509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122085824 122085840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4356 nt):
ATGTGGAAGAGCAGACGGGCTCAGCTGTGTCTTTTTTCAGTTCTTCTTGCCTTCCTGCCTTCTGCTTCTT
CACTCAATGGAGACTCGAAGTATATGGTGCTGGTCCCTTCTCAGCTCTACACTGAGACCCCTGAGAAAAT
CTGCCTCCATTTATACCATCTGAATGAGACAGTGACCGTTACAGCTTCCTTGGTATCTCAAACGGGAAGG
AGAAACCTGTTCGATGAGCTTGTGGTTGACAAGGACTTGTTCCAATGTGTTTCCTTCATTATCCCTACAC
TCAACTCTCCTGATGAGGAGGAGTTTCTCTACGTGGACATCAAAGGGCCAACCCACGAATTCAGCAAAAG
GAATGCAGTGCTTGTGAAGAACAAAGAAAGTGTTGTCTTTGTCCAGACAGATAAGCCCGTGTACAAGCCA
GGACAATCAGTTAAATTTCGGGTTGTCTCTATGGATAAAACTCTACGCCCCCTGAATGAGTTGCTTCCTC
TGGCTTACATTGAGGATCCGAAAAAGAACCGAATTATGCAGTGGAGGGATATTAAGACTGAGAATGGGCT
TAAGCAAATGTCCTTCAGCCTGGCAGCAGAGCCCATTCAGGGCCCCTACAAGATAGTGGTGCACAAACAG
TCAGGGGTGAAGGAAGAACACTCCTTTACTGTGATGGAATTTGTGCTTCCCAGATTTAATGTCGACCTGA
AGGTCCCAAATGCCATCTCTGTGAATGATGAAGTGCTCCAAGTGACTGTATGTGGGAAATATACCTATGG
GAAGCCTGTTCCAGGACAGGTGAAGATAAGTATCTGCCATGAGACTGAAGCTGGATGCAAAGAAGTCAAT
TCCAAGCTAGACAACAATGGCTGCAGTACACAAGAAGTGAACATCACTGAGCTCCAATCAAAGAAAAGGA
ATTATGAGGTTCAGCTTTTCCATGTGAATGCAACTGTTACAGAAGAAGGGACAGGACTGGAGTTCAATGG
ATATGGAACAACTAAAATTGAAAGAATCACAAACAAGCTCATATTTCTGAAGGCAGATTCACACTTCAGA
CATGGGATTCCATTCTTTGTGAAAGTCCGCCTAGTGGATATCAAGGGAGACCCTATCCCAAATGAGAGAG
TCTTCATCAAAGCACAAGTACTTGGCTATACCAGTGCTACTACCACTGATCAGCATGGCCTGGCAAAGTT
CTCCATAGACACTGCTGGCTTCTCGGGCTCTTCCCTCCATATCAAAGTCAACCACAAAGGGAAAGATTCA
TGTTACTTTTTCTATTGCATGGAGGAAAGATATGCAAGTGCAGAGCATGTGGCCTATGCTGTTTATTCCC
TCAGCAAGAGCTACATCTACCTTGTCAAAGAGACCAGCAGCATCTTGCCCTGCAACCAGATTCACACAGT
TCAGGCACATTTTATTCTGAAGGGGGACTTAGGAGTGCTGAAAGAGCTCGTTTTCTACTACCTGGTCATG
GCCCAGGGAAGCATCATCCAGACTGGAAACCATACTCACCAGGTGGAGCCAGGAGAAGCTCCAGTAAAAG
GCAACTTTGACTTGGAGATTCCTGTGGAGTTCAGCATGGCCCCCATGGCTAAAATGCTCATCTACACCAT
CTTGCCTGATGGAGAAGTGATTGCAGATTCTGTAAACTTTGAAATTGAAAAGTGTCTTCGCAACAAAGTG
GACCTGAGCTTCAGCTCATCTCAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTC
AATCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGCGTGCTGCTCCTGAAGCCCGAGGATGAGCTCTCCCC
TTCCTGGATATACAATCTGCCAGGTATGCAGCACAACAAATTCATTCCAAGTTCCAGTCTGTCTGAAGAC
CGAGAAGACTGTATACTGTACAGTTCATGGGTGGCTGAGAAGCACACAGACTGGGTACCACATGGAAGAG
AGAAGGATGTCTACAGATATGTGGAGGACATGGATTTAAAGGCATTCACCAACTTGAAGATCAAACTTCC
TAAAATTTGTTTTGACTCTGCTCCAATGTCAGGGCCTCGTGGGAAATTTGATCTTGCATTTAGTAGTGAA
GTTTCTGGGACATTGCAAAAGGGATCAAGTAAAAGACCTCAACCTGAAGAGCCACCACGTGAAGACCCAC
CACCTAAAGATCCACTTGCCGAGACCATTCGAAAATATTTTCCTGAAACCTGGGTCTGGGATATAGTCAC
AGTAAACTCCACAGGAGTGGCTGAAGTGGAAATGACAGTCCCTGACACCATCACTGAATGGAAGGCCGGA
GCCCTCTGCCTATCCAATGACACTGGCCTTGGCCTCTCTTCTGTGGTACCTCTCCAAGCCTTCCAGCCCT
TCTTTGTGGAAGTCTCATTGCCCTACTCCGTGGTCCGTGGAGAAGCCTTCATGCTCAAAGCCACTGTGAT
GAACTACCTCCCTACAAGCATGCGGATGAGTGTGCAGCTGGAAGCCTCTCCTGATTTCACAGCTGTCCCA
GTGGGAGATGACCACGATTCTTACTGCCTCAGTGCCAATGGGAGGCACACCTCATCCTGGCTGGTAACTC
CCAAGTCTTTAGGGAATGTGAATTTCTCTGTGTCTGTGGAAGCACAACAGTCCTCAGAGCCCTGTGGTTC
TGAGGTGGCCACAGTTCCTGAAACTGGGAGAAAGGACACAGTAGTCAAAGTCCTGATAGTTGAGCCTGAA
GGAATCAAGCAAGAGCATACCTTCAACTCACTGTTCTGTGCATCAGATGCTGAGATATCTGAAAAAATGT
CCCTGGTCCTCCCACCAACAGTAGTGAAAGATTCAGCAAGAGCGCATTTCTCTGTGATGGGTGATATCTT
GAGTTCAGCCATAAAAAACACACAAAACCTTCTCCATATGCCCTATGGCTGTGGGGAGCAGAACATGGTC
CTTTTTGCTCCCAACATCTACGTATTGAAATATCTGGATAAAACCCAACAGCTGACTCAGAAGATCAAGA
CTAAGGCCCTCGGCTTCCTTAGAGCTGGTTATCAGAGAGAGCTGAACTACAAACACAAGGATGGCTCCTA
CAGTGCCTTCGGGGATCAAAATGGCGAGAGAGAGGGAAACACTTGGCTCACAGCCTTTGTGCTCAAGTCT
TTTGCCCAAGCTCGAGCCTTCATCTTCATCGATGAATCACACATCACCCATGCCTTCACCTGGCTCTCCC
AGCAGCAGAAGGACAATGGCTGCTTCCGGAGCTCCGGATCATTGTTCCACAATGACATAAAGCATCCTGT
TGTCTCCAAAGCCCTGAGCTGCCTGGAGTCTTCCTGGAAGACCATAGAACAAGGGCGAAATGCCAACTTT
GTGTATACCAAGGCACTGATGGCCTATGCTTTCGCTCTGGCGGGAAACCAGGATAAGAGAAATGAAATCC
TGAAGTCACTTGATGAGGAAGCTATAAAAGAAGACAACTCCATCCACTGGGAAAGACCTCAGAAACCCAG
GAAATCCGAACACAATTTGTACAAACCCCAGGCTTCCTCTGTTGAAGTAGAGATGAATGCCTATGTGGTC
CTGGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGATCTGACTTTGTCAAGGAGCACCATCATGT
GGCTCACAAAGCAACAGAATTCCAATGGTGGCTTCTCCTCCACACAGGACACTGTGGTGGCCCTTGATGC
TCTGTCCAAATATGGAGCAGTGACTTTTTCCAGAAGGCAGAAAACTTCTTTGGTGACCATCCAATCTACA
GGGTCATTTTCCCAAAAGTTCCAAGTGGAGAACAGTAATTGCCTGTTACTTCAGCAGGTCCCATTACCAG
ACATTCCTGGGGACTATACCATCAGTGTATCAGGGGAAGGATGTGTGTATGCTCAGACTACACTGAGATA
CAACATGCACTTGGAGAAGCAGCAGTCTGCATTTGCTCTACGGGTACAGACAGTACCTCTAACTTGTAAT
AACCCCAAAGGCCACAACAGCTTCCAGATCTCACTAGAAATCAGTTACACAGGCAGCCGGCCAGCCTCCA
ACATGGTGATTGCTGATGTGAAGATGCTATCTGGTTTCATCCCATTGAAACCAACAGTGAAAAAGCTTGA
AAGATTAGAGCACATAAGCAGAACAGAAGTGAGCAACAACAATGTCTTATTATATTTGGATCAGGTGACC
AATCAGACACTGGCCTTCTCCTTCATCATTCAACAAGACATCTCAGTACGGAACCTGCAGCCTGCCATTG
TGAAAGTCTATGACTACTATGAGACAGATGAAGTGGCTTATGCTGAATACAGCAGTCCCTGCAGCTCAGA
CAAACAAAATGTTTGA

Translation (1451 aa):
MWKSRRAQLCLFSVLLAFLPSASSLNGDSKYMVLVPSQLYTETPEKICLHLYHLNETVTVTASLVSQTGR
RNLFDELVVDKDLFQCVSFIIPTLNSPDEEEFLYVDIKGPTHEFSKRNAVLVKNKESVVFVQTDKPVYKP
GQSVKFRVVSMDKTLRPLNELLPLAYIEDPKKNRIMQWRDIKTENGLKQMSFSLAAEPIQGPYKIVVHKQ
SGVKEEHSFTVMEFVLPRFNVDLKVPNAISVNDEVLQVTVCGKYTYGKPVPGQVKISICHETEAGCKEVN
SKLDNNGCSTQEVNITELQSKKRNYEVQLFHVNATVTEEGTGLEFNGYGTTKIERITNKLIFLKADSHFR
HGIPFFVKVRLVDIKGDPIPNERVFIKAQVLGYTSATTTDQHGLAKFSIDTAGFSGSSLHIKVNHKGKDS
CYFFYCMEERYASAEHVAYAVYSLSKSYIYLVKETSSILPCNQIHTVQAHFILKGDLGVLKELVFYYLVM
AQGSIIQTGNHTHQVEPGEAPVKGNFDLEIPVEFSMAPMAKMLIYTILPDGEVIADSVNFEIEKCLRNKV
DLSFSSSQSLPASQTRLQVTASPQSLCGLRAVDQSVLLLKPEDELSPSWIYNLPGMQHNKFIPSSSLSED
REDCILYSSWVAEKHTDWVPHGREKDVYRYVEDMDLKAFTNLKIKLPKICFDSAPMSGPRGKFDLAFSSE
VSGTLQKGSSKRPQPEEPPREDPPPKDPLAETIRKYFPETWVWDIVTVNSTGVAEVEMTVPDTITEWKAG
ALCLSNDTGLGLSSVVPLQAFQPFFVEVSLPYSVVRGEAFMLKATVMNYLPTSMRMSVQLEASPDFTAVP
VGDDHDSYCLSANGRHTSSWLVTPKSLGNVNFSVSVEAQQSSEPCGSEVATVPETGRKDTVVKVLIVEPE
GIKQEHTFNSLFCASDAEISEKMSLVLPPTVVKDSARAHFSVMGDILSSAIKNTQNLLHMPYGCGEQNMV
LFAPNIYVLKYLDKTQQLTQKIKTKALGFLRAGYQRELNYKHKDGSYSAFGDQNGEREGNTWLTAFVLKS
FAQARAFIFIDESHITHAFTWLSQQQKDNGCFRSSGSLFHNDIKHPVVSKALSCLESSWKTIEQGRNANF
VYTKALMAYAFALAGNQDKRNEILKSLDEEAIKEDNSIHWERPQKPRKSEHNLYKPQASSVEVEMNAYVV
LARLTAQPAPSPEDLTLSRSTIMWLTKQQNSNGGFSSTQDTVVALDALSKYGAVTFSRRQKTSLVTIQST
GSFSQKFQVENSNCLLLQQVPLPDIPGDYTISVSGEGCVYAQTTLRYNMHLEKQQSAFALRVQTVPLTCN
NPKGHNSFQISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLEHISRTEVSNNNVLLYLDQVT
NQTLAFSFIIQQDISVRNLQPAIVKVYDYYETDEVAYAEYSSPCSSDKQNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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