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Report for CCDS37413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37413.1 Public Mus musculus 16 Lca5l 23 108 98 CCDS HistoryNCBI Gene:385668Re-query CCDS DB by CCDS ID:37413.1Re-query CCDS DB by GeneID:385668See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054855.13 ENSMUSP00000061337.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054855.13Link to Ensembl Protein Viewer:ENSMUSP00000061337.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054855Re-query CCDS DB by Protein ID:ENSMUSP00000061337
Original member NCBI NM_001001492.2 NP_001001492.2 Updated not alive Link to Nucleotide Sequence:NM_001001492.2Link to Protein Sequence:NP_001001492.2Re-query CCDS DB by Nucleotide ID:NM_001001492Re-query CCDS DB by Protein ID:NP_001001492
Current member NCBI NM_001001492.3 NP_001001492.2 Accepted alive Link to Nucleotide Sequence:NM_001001492.3Link to Protein Sequence:NP_001001492.2Re-query CCDS DB by Nucleotide ID:NM_001001492Re-query CCDS DB by Protein ID:NP_001001492Link to BLAST:NP_001001492.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001492.2 735 Q8C0X0-2 735 100% 0 0

Chromosomal Locations for CCDS 37413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 96159068 96159867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96161331 96161441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96161983 96162100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96162559 96162662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96163916 96164000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96173733 96173870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96175753 96176267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96178607 96178938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96180045 96180049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGAGGTTGTGGACTATGTCTTTGGCTGATACAACAGAAGCACACACAAACGAGCATTTCCCCAGTCTGG
CA
CTAGGAAGCAACAAGAAGTCTACAGAAGGCAAGCGTAGCCCTGGCGCTGGTGGCCAGTCCCAGAACAG
C
CAGGCTTCCAATGGGAGCGTGGATTACAGCAGGTCTCAGTGCTCCTGCACAAGCCTGACTTCTCACTAT
GAC
TACTCAGAAGACTTTCTCTCTGACTGCTCTGAGACGGCCGTCAGGAGACTCCAGTCAGAGAAGCCTC
TG
GCAAAGGCGAAGGAGAAAAGGAAGTACAACGCTGGTAAACTCCCCCAGCCTAGAGGCCAGAAGGACAT
C
CCAGCTGAGAAAAAGCAATTCTGGAATGCTTCGTTGATCAGTTCTCAAATTCAAACGATTGCCAAGAGA
AGA
GACACCATGACACATCGGATACTGTCAGCCAGGCTTCATAAGATCAAAGAGCTGAAGAACGAGCTGG
CA
GACGTACATCGGAAGCTGGAAGCCTCTGCCATAGAAAACCAATTTCTGAAGCAGCTTCAGCTTAGACA
C
CTGAAAGCCATAGGGAAATACGTGAACTCTCAGAACAACCTACCTCAAATCACAGCCAAGCACCAGAAT
GAG
GTGAAGAACCTTCGACAGCTCCTCCGGAAATCCCAGGAGAAGGAGCGAGCTGTGTCCAGGAAACTCC
GA
GAAACCGACGGCGAGTTACTGAGGACCAAAGACGTCTTGCAAGCCCTGCAGAGACTCTCAGAAGACAA
A
AACCTTGCAGAGAGAGAAGAACTGACTGACAGGTTGACCGACCTTACAGCCAAAATGGAAGCAAATGAT
AAA
AAAATACAGAACTTGGAAAAACAGCTGCGACTGAACAATCGGTCCTACAGTCGACAGCTGGCCAAAG
AA
AATCGGAAGACGTTAGCAGCTCAAACAGCAACAAAGACTCTGCAGGCAGAAGTGAGACAGCTGCAGCA
G
AAGCTTAAGGAGAAGGACCGTGAGCTGGAGATCAAAAACATCTATACGAATCGAATACTCAAAAACTTA
AAT
GATAAGGAAGACTATCCGAAAGTTTCTTCAACGAAATCAGTGCAAGCGGACAGGAAAAGCCTGCCAT
CT
GTAAATATGAGACACCAGGAAACTCAAAAGTCAGATGTCCCATTTTGGATAACCAAGGGTAAAAGGGG
G
AAAGGAAACATTGCTCATAAAGAAAAATCAACAGAAACAAACCATGATATTCCTTACTATGTGTGTAAG
CTA
CCAAAGCAAGAAGAGTCTAAGAGAAAATATGAAGCCAATCTCACGGTCTTAAAGAGCATGCCATCTC
CT
CCAGCTTCCTGGGGACTGGTGGCCACTGAGCAGATCTGTGCCTTCCATCTGGAATGTCACTCTTGTAC
C
CATACAGCAGATTTATCAAAGGAGGTCGAACACCGGAAACCACAAACCTCTCTGGAAACTCCTAGGAGG
CCA
AAAGAGAATAAGGAAGACCAAGAAAAGAGAGCCATCCCAGCAGAGGCAGAGCCAACTGCAAAGGAAA
GC
GAGGCCCACAAGGACGCCGAGGATAAGGCCCTGACCAGGGCGGCCGGCAATGCAGGCGATGCAGGCGA
T
GCGGGCGATGCCGGCAATGACCGCGAGGTGGTCGGGGAGCACAAAGTGGTCGGAGCGCAAGAGGTGGTC
GGG
GCACAGGAGCTGCCCGGGGCAGATGAGGCGGACGAGGTGCACGGGGCGGGCGAGGCCCCGCGCGATG
TC
GAGCCCGGGCGCGGCAGGAGGAAGACCCCGCGGAAGCACTACTCCTTCACCGAGGCCACCGAAAACCT
G
CACCACGGGCTGCCCACCTCCTGCAGGCAGGTTTCGGGCAGCCCGCACTGCCGCTGCCGCCACGACATG
GGC
AAGCACCGCAGCGAGCAGGAGCTGCGGCTGGAGCCTGCCGGCTACGAGCCCTCGTTCGGCAAGGGGG
CC
GGGGCCAGGGCCAGGGCCAGGGCCAGGGCGACGGCATTCCGCGACAGAAAGAGCAGCCTCATGGAGGA
G
CTGTTCGGCGCGGGCTTCGCGGGCAGGGCGGGCTCCAGCGACAGCGAGGCAGTCAGCAAGTCCCCGCAG
ACG
GGGCCCCAGGCCTCTGCCGGCAACGCCTTCGGGGACTCTAGAGCCACCGTGGCGGGGTCCATCCAGG
CC
TCGCCCACCGAAGCCAACAGGAAGACTGTTGTTTAA


Translation (735 aa):
MRLWTMSLADTTEAHTNEHFPSLALGSNKKSTEGKRSPGAGGQSQNSQASNGSVDYSRSQCSCTSLTSHY
D
YSEDFLSDCSETAVRRLQSEKPLAKAKEKRKYNAGKLPQPR
GQKDIPAEKKQFWNASLISSQIQTIAKR
R
DTMTHRILSARLHKIKELKNELADVHRKLEASAIENQFLKQLQLRHLKAIGKYVNSQNNLPQITAKHQN
E
VKNLRQLLRKSQEKERAVSRKLRETDGELLRTKDVLQALQRLSEDKNLAEREELTDRLTDLTAKMEAND
K
KIQ
NLEKQLRLNNRSYSRQLAKENRKTLAAQTATKTLQAEVRQLQQKLKEKDRELEIKNIYTNRILKNL
N
DKEDYPK
VSSTKSVQADRKSLPSVNMRHQETQKSDVPFWITKGKRGKGNIAHKEKSTETNHDIPYYVCK
L
PKQEESKRKYE
ANLTVLKSMPSPPASWGLVATEQICAFHLECHSCTHTADLSKEVEHRKPQTSLETPRR
P
KENKEDQEKRAIPAEAEPTAKESEAHKDAEDKALTRAAGNAGDAGDAGDAGNDREVVGEHKVVGAQEVV
G
AQELPGADEADEVHGAGEAPRDVEPGRGRRKTPRKHYSFTEATENLHHGLPTSCRQVSGSPHCRCRHDM
G
KHRSEQELRLEPAGYEPSFGKGAGARARARARATAFRDRKSSLMEELFGAGFAGRAGSSDSEAVSKSPQ
T
GPQASAGNAFGDSRATVAGSIQASPTEANRKTVV




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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