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Report for CCDS37258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37258.1 Public Mus musculus 16 Mrtfb 23 108 98 CCDS HistoryNCBI Gene:239719Re-query CCDS DB by CCDS ID:37258.1Re-query CCDS DB by GeneID:239719See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149359.1 ENSMUSP00000122815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149359.1Link to Ensembl Protein Viewer:ENSMUSP00000122815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149359Re-query CCDS DB by Protein ID:ENSMUSP00000122815
Original member Current member NCBI NM_153588.3 NP_705816.2 Accepted alive Link to Nucleotide Sequence:NM_153588.3Link to Protein Sequence:NP_705816.2Re-query CCDS DB by Nucleotide ID:NM_153588Re-query CCDS DB by Protein ID:NP_705816Link to BLAST:NP_705816.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705816.2 1080 P59759 1080 99.9074% 0 1

Chromosomal Locations for CCDS 37258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13358639 13358759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13378264 13378329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13379840 13379895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13381528 13381603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13384194 13384355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13385606 13385784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13394823 13394960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13398224 13398486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13400080 13400179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13400653 13401684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13403155 13403310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13405249 13405407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13405765 13405902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13409617 13409677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13412160 13412695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3243 nt):
ATGATCGATAGCTCCAAGAAGCAGCCACAAGGCTTCCCAGAAATTTTAACTGCTGAGGATTTTGAACCTT
TCAAAGAAAAGGAATGCCTTGAGGGAAGCAACCAGAAAAGTCTCAAGGAAGTGCTCCAGCTGAGGCTGCA
ACAAAGGAGGACAAGAGAACAACTAGTGGACCAGGGCATCATGCCACCTTTGAAGAGTCCAGCAGCATTC
CATGAGCAGATAAAAAGCCTGGAGCGAGCCAGAACTGAGAATTTTCTGAAGCACAAGATCCGGAGCCGCC
CAGACCGCTCTGAGCTTGTCAGGATGCATATTTTAGAAGAAACGTTTGCAGAGCCATCTCTTCAGGCCAC
ACAGATGAAGCTGAAGAGAGCTCGGCTGGCAGATGACCTGAACGAGAAGATTGCTCAAAGGCCTGGTCCC
ATGGAGCTGGTGGAGAAGAACATCCTTCCTGTGGATTCGAGTGTCAAGGAAGCGATTATAGGTGTGGTGA
AGGAGGACTATCCTCACACTCATGGCGAGTTCTCATTTGATGAAGATAGCAGTGATGCTTTGTCTCCAGA
CCAGCCAGCGAGCCAGGAGTCTCAGGGCTCAGCTGCATCCCCCAGTGAGCCAAAAGTCAGTGCCTCGCCA
CCTCCTGTGACTGCAAGCACTCCAGCCCAGTTTACCTCAGTGTCCCCAGCAGTTCCTGAATTCTTGAAAA
CCCCTCTAACTGCAGACCAGCCTCCCACAAGGTCTACAGCTCCCGTGCTCCCTACAAACACTGTGTCCTC
AGCGAAGTCTGGCCCAATGCTGGTGAAGCAAAGCCATCCCAAGAATCCAAACGACAAACACCGTAGCAAA
AAATGCAAAGATCCGAAACCGCGAGTGAAGAAGCTTAAGTACCACCAGTACATTCCACCCAACCAGAAGG
GGGAGAAGAGCGAGCCACAGATGGACTCCAACTATGCCCGCCTGCTCCAGCAGCAGCAGCTCTTCCTACA
GCTGCAGATCCTGAGCCAGCAGCAGCAGCAACAGCAGCAGCAGCACTACAACTACCAGACCATCCTACCT
GCACCCATCAAAACTGACAAGAACAGCAGCAGCGGCAGTAACAGCGGCAGTAGCAGCAGCATGCCGGCGA
GGAGGCCAGGACCGCTGCCCTCCAGCTTGGATGACTTAAAGGTGTCAGAGCTGAAGACAGAACTCAAACT
GAGGGGTCTGCCAGTGTCAGGAACTAAACCAGACCTCATTGAACGCCTGAAACCCTACCAGGAAGTGACC
AGTAGTAACCTTGCCACTGGCAGTATTGTGGCAGTGTCATCAGCAACCATTGTCACCAGTAACCCAGAGG
TCACAGTGGCACTGCCAGTCACAACACTGCATAATGCTGTAACAAGCTCTGTGTCCACTTTCAAGGCAGA
CTTGGCACTTCCTGCAACCAGCAGTGTGCCCCATGTTGAAAATGCCCACTCTCCTCTGCCCATCTCCCCA
TCACCCTCTGAGCAGTCCAGTCTCAGTACCGATGACACAAACATGACAGACACCTTCACAGAGATCATGA
CTATGATGTCACCTTCCCAGTTGTTGTGTTCATCTCCCCTGAGGGTGGTGAGCCATGATGACAGCCTGAG
CCCTTCCAGTAGCACCCTGTCTACTCTAGAACTGGATGCTGCTGAGAAGGACCGCAAACTTCAGGAGAAG
GAGAAACAGATTGAAGAACTGAAGAGGAAACTGGAACAAGAACAGAAGCTTGTGGAGGTCCTCAAGATGC
AGCTTGAGGTGGAAAAACGTGGGCAGCAGCGACCACCAGACCCTCAGCCCAGTGATCCCCCACATCCCTT
TAATACATCAGATCCTAAACATGGCAGTGTTGGGTCCTCCATCAAGGATGAGGCCTCACTCCCTGACTGC
TCCAGCCCCCAGCAGCCCATCACAGTGCCTGGCCACTCTGTAGGCCAGCCCATCTCCACGGGTAGCCAGA
CCCTTGTTGCCAAAAAGACTGTGGTCGTCAAGCAAGAGGTCCCCATGGCCCAAGCAGAGCAGCAGAACGT
TGTCTCGCAGTTCTACCTTAGTTCCCAGGGACAGCCACCTGCCCTTGTTGCTCAGCCTCAGGCCTTACTG
ACCACACAGACAACTCAGCTGCTGCTGCCAGTGTCCATCCAGGGCTCAAATGTTACTTCAGTGCAACTCC
CAGTAGGCAGCCTTCAACTCCAGACCCCAGCACAAGGAAGAGTCCAGGCTCAGCCTCATGTAGCTGCTGC
CACACAGGTTCCAGCTGCAGCCCTGCCCTCAGCCTTGACCTCAGCACTGCCTCAGAAGCAGGAAGCCTTC
CCACAGCACGTGTTGGGCCAGCCTCAGCCAGTCAGAAAGGTCTTCACAAACTCGGCACCAAACACAGTTC
TTCAGTATCAGAGGCAGCCTGGCCCAACGAACCAGCAGCCCTTTGTCAGTAAGACCTCTAACCCTGCTCT
TCAATCCAGAACTGCCCCACTTGCACCCCTGCAAAATGGACCCAGCCTAGCCAGCAAGCCTAGCTCACCA
CCCCCACCCCAGCAGTTTGTTGTTCAGCACTCTTTGTTTGCAACCCCAATCACGAAGACAAAAGATCCAC
CTCGATATGAGGAAGCCATCAAGCAGGCACGTAGCACACAGCCAGCCCTTCCAGAGGTTTCCAGTGTGCA
CAGTCAGCAGATGGACGACCTCTTCGACATCCTCATAAAGAGTGGAGAGATTTCCTTCCCAATAAAAGAA
GAGCCTTCTCCAATTTCCAAGATGAAACCAGTGACAGCCAGCATCACCACAATGCCAGTCAATACCGTGG
TCTCTCGACCACCGCCCCAGGTCCAAATAGCACCACCTGTATCCTTAGAACCTGTGAACAGTTTATCTGC
CAGCTTAGAGAACCAGCTAGAAGCCTTCTTGGATGGCACTTTGCCCTCGGCCACTGACACTGGCCCACTG
CAGAACAGCAGTGAAGATAGAGAGTCTTTCTCTCTGATCGAGGATCTGCAGAACGACTTGCTGAGTCATT
CCAGCATGCTGTACCAGTCTCACTCTCCCATGGAGACCTCTGAGGCCCAGTTGGTGTCAGGGACCCCCTG
TCTATCTCTTGACCTGTCAGACTCCAACCTGGACAACATGGAGTGGCTAGACATTACCATGCCCACCACA
TCCTCCGGGCTCACTCCACTGAGTACCACTGCGCCAAGCATGTTCTCTGCTGATTTTCTGGACCCACAGG
ACCTGCCGCTGCCATGGGACTAA

Translation (1080 aa):
MIDSSKKQPQGFPEILTAEDFEPFKEKECLEGSNQKSLKEVLQLRLQQRRTREQLVDQGIMPPLKSPAAF
HEQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETFAEPSLQATQMKLKRARLADDLNEKIAQRPGP
MELVEKNILPVDSSVKEAIIGVVKEDYPHTHGEFSFDEDSSDALSPDQPASQESQGSAASPSEPKVSASP
PPVTASTPAQFTSVSPAVPEFLKTPLTADQPPTRSTAPVLPTNTVSSAKSGPMLVKQSHPKNPNDKHRSK
KCKDPKPRVKKLKYHQYIPPNQKGEKSEPQMDSNYARLLQQQQLFLQLQILSQQQQQQQQQHYNYQTILP
APIKTDKNSSSGSNSGSSSSMPARRPGPLPSSLDDLKVSELKTELKLRGLPVSGTKPDLIERLKPYQEVT
SSNLATGSIVAVSSATIVTSNPEVTVALPVTTLHNAVTSSVSTFKADLALPATSSVPHVENAHSPLPISP
SPSEQSSLSTDDTNMTDTFTEIMTMMSPSQLLCSSPLRVVSHDDSLSPSSSTLSTLELDAAEKDRKLQEK
EKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQRPPDPQPSDPPHPFNTSDPKHGSVGSSIKDEASLPDC
SSPQQPITVPGHSVGQPISTGSQTLVAKKTVVVKQEVPMAQAEQQNVVSQFYLSSQGQPPALVAQPQALL
TTQTTQLLLPVSIQGSNVTSVQLPVGSLQLQTPAQGRVQAQPHVAAATQVPAAALPSALTSALPQKQEAF
PQHVLGQPQPVRKVFTNSAPNTVLQYQRQPGPTNQQPFVSKTSNPALQSRTAPLAPLQNGPSLASKPSSP
PPPQQFVVQHSLFATPITKTKDPPRYEEAIKQARSTQPALPEVSSVHSQQMDDLFDILIKSGEISFPIKE
EPSPISKMKPVTASITTMPVNTVVSRPPPQVQIAPPVSLEPVNSLSASLENQLEAFLDGTLPSATDTGPL
QNSSEDRESFSLIEDLQNDLLSHSSMLYQSHSPMETSEAQLVSGTPCLSLDLSDSNLDNMEWLDITMPTT
SSGLTPLSTTAPSMFSADFLDPQDLPLPWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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