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Report for CCDS37085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37085.1 Public Mus musculus 15 A1bg 23 108 98 CCDS HistoryNCBI Gene:117586Re-query CCDS DB by CCDS ID:37085.1Re-query CCDS DB by GeneID:117586See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096418.4 ENSMUSP00000094151.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096418.4Link to Ensembl Protein Viewer:ENSMUSP00000094151.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096418Re-query CCDS DB by Protein ID:ENSMUSP00000094151
Original member Current member NCBI NM_001081067.1 NP_001074536.1 Accepted alive Link to Nucleotide Sequence:NM_001081067.1Link to Protein Sequence:NP_001074536.1Re-query CCDS DB by Nucleotide ID:NM_001081067Re-query CCDS DB by Protein ID:NP_001074536Link to BLAST:NP_001074536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074536.1 512 Q19LI2 512 100% 0 0

Chromosomal Locations for CCDS 37085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 60917859 60918151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60918880 60919176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60919637 60919933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60920126 60920398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60920718 60921026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60921111 60921146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 60921223 60921256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGTCTCTGCTGGCTACTGTACTGCTGCTCTGGGGGTTCACTCTGGGCCCAGGAAATACTCTAATGCTCG
ATTCTGGCAGTGAACCTAAACTATGGGCAGAGCCTCAGTCCCTGCTGGAACCCTGGGCAAACCTGACCCT
GGTGTGTGCAGTTGATTTGCCGACTAAGGTCTTCGAGCTGATCCAGAACGGGTGGTTCCTGAGTCAAGTC
CGACTTGAGACACAGGTGCTGTCATACCGCTTTTCCCTGGGGGCCATTACAAGTAACAACAGTGGCATCT
ACCGCTGCAGATGTGGCGTGGAACCCCCTGTTGACATTCACCTGCCAGCACTGAACAAGTGGACCATGCT
AAGCAATGCTGTGGAGGTGACAGGGAAAGAGCCCTTGCCTCGGCCCTTGGCTCATGCTGATCCAGTCGAC
TGGATCACACCTGGTGGCCTGCCTGTATACGTGATGTGCCAGGTTGCAATGCGGGGTGTGACCTACCTGC
TGAGGCAGGAAGGAGTGGATGGCGTCCAGAAACCTGATGTCCAGCACAAGGGAACAGCTGGCTTTTTAAT
CTACAAGCCTGGCAACTACAGCTGCAGCTACCTAACCCATGCAGCAGGTGAACCCTCTGAGCCCAGTGAT
ATTGTGACCATCAAGATGTATGCCTCACAGGCTCCACCCACTCTGTGTTTGATGGGAAACTACCTAATGA
TCTACCCCCAGAAGACATATGAGACCCTTGCCTGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTCAG
GCAAGGAGGGAAGGTGCTGAAAATTCATGGGTTTAGCCCCACCAGAGATGCTATCCTGTACTATGTGAAC
TTGAAGGAACTGGATAACCCAGGTCCTTTCACCTGCCGCTACCGGATGCACAAATACATGCACGTTTGGT
CAGAGGACAGCAAGCCCGTAGAGTTAATGTGGAGTGATGAGACTCTACAAGCTCCGGTACTTACTGCAGA
GCCATCGAGTAGGGACCTTGAGCCTGGTTCAACGGTGCAGCTTCGATGTACTGCACCCGTATCCGGCCTG
CGCTTTGGCCTGCAACGCCAGGGCAAACCGGAATTAGTTGTGGTGCAAATGCTGAATTCGTCTGGGACCG
AAGCAGTCTTTGAGCTGCACAATATCTCAACAATAGACTCTGGAAACTACAGCTGTATCTACATGGAACA
GGCACCGCCATTCTCAGGATCTTCTTCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAG
CCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAAGCCATCTTTCGATGCCACGGCC
ATGTGCCTAGGGTCAGCATGGAGCTGGTACGTGAGGGCTTTAAAACACCCTTCGCGGTGGCCTCCACAAG
AAGCACCTCAGCTTACCTGAAGCTGCTCTTCGTCGGTCCCCAACATGCAGGCAACTACAGCTGCCGCTAT
ACGGCCCTGCCGCCCTTCACATTTGAATCAGGGATCAGCGACCCTGTGGAGGTTATAGTAGAAGGTTAG

Translation (512 aa):
MSLLATVLLLWGFTLGPGNTLMLDSGSEPKLWAEPQSLLEPWANLTLVCAVDLPTKVFELIQNGWFLSQV
RLETQVLSYRFSLGAITSNNSGIYRCRCGVEPPVDIHLPALNKWTMLSNAVEVTGKEPLPRPLAHADPVD
WITPGGLPVYVMCQVAMRGVTYLLRQEGVDGVQKPDVQHKGTAGFLIYKPGNYSCSYLTHAAGEPSEPSD
IVTIKMYASQAPPTLCLMGNYLMIYPQKTYETLACKAPRNAAEFQLRQGGKVLKIHGFSPTRDAILYYVN
LKELDNPGPFTCRYRMHKYMHVWSEDSKPVELMWSDETLQAPVLTAEPSSRDLEPGSTVQLRCTAPVSGL
RFGLQRQGKPELVVVQMLNSSGTEAVFELHNISTIDSGNYSCIYMEQAPPFSGSSSSEPVELRVNGPPPK
PRLEALWKSTVHLGQEAIFRCHGHVPRVSMELVREGFKTPFAVASTRSTSAYLKLLFVGPQHAGNYSCRY
TALPPFTFESGISDPVEVIVEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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