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Report for CCDS37039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37039.1 Public Mus musculus 15 Lmbrd2 23 108 98 CCDS HistoryNCBI Gene:320506Re-query CCDS DB by CCDS ID:37039.1Re-query CCDS DB by GeneID:320506See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227556.1 ENSMUSP00000154020.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227556.1Link to Ensembl Protein Viewer:ENSMUSP00000154020.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227556Re-query CCDS DB by Protein ID:ENSMUSP00000154020
Original member NCBI NM_177178.3 NP_796152.2 Updated not alive Link to Nucleotide Sequence:NM_177178.3Link to Protein Sequence:NP_796152.2Re-query CCDS DB by Nucleotide ID:NM_177178Re-query CCDS DB by Protein ID:NP_796152
Current member NCBI NM_177178.4 NP_796152.2 Accepted alive Link to Nucleotide Sequence:NM_177178.4Link to Protein Sequence:NP_796152.2Re-query CCDS DB by Nucleotide ID:NM_177178Re-query CCDS DB by Protein ID:NP_796152Link to BLAST:NP_796152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796152.2 694 Q8C561-1 694 100% 0 0

Chromosomal Locations for CCDS 37039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9149032 9149205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9149455 9149552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9151484 9151579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9156206 9156373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9157213 9157423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9165788 9165862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9171097 9171210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9172057 9172240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9175124 9175305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9175786 9175919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9177652 9177757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9178262 9178359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9182485 9182588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9183910 9183956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9186596 9186701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9194675 9194801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9196656 9196716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGAGTGGTGCGGCTTTAGGACTTGAGATTGTTTTTGTCTTTTTTCTGGCATTGTTCCTCCTGCATCGCT
ATGGAGACTTTAAGAAACAGCACAGACTGGTAATCATCGGCACACTGCTTGCTTGGTATCTCTGCTTTCT
CATTGTCTTCATACTGCCGCTGGATGTCAGTACGACAATATATAACCGATGCAGGCATGCTGCTGCAAAT
TCCAGCCCTCCTGAAAATACCAACGTTACGGGACTGGATGCATCTGTCACTCCAGCTCCAAGACAGCATC
CATGTTTCAAGCCGTGGAGTTACATTCCAGATGGAATCATGCCAATTTTCTGGAGGGTAGTTTATTGGAC
ATCACAGTTTTTGACGTGGATCCTGTTACCTTTTATGCAGTCATATGCAAGATCTGGAGGTTTCTCCATC
ACCGGCAAGATCAAAACAGCCCTGATTGAGAATGCCATCTATTACGGCACTTACTTGCTGATATTTGGAG
CATTTCTGATTTACGTAGCTGTAAACCCACGTTTGCATTTAGAATGGAACCAACTTCAGACGATTGGGAT
AGCTGCTGCCAACACATGGGGTCTGTTTCTCCTTGTGTTATTATTGGGGTATGGATTGGTGGAAATTCCT
CGGTCATACTGGAATGGAGCCAAAAGGGGTTATCTTCTTATGAAGACTTACTTTAAGGCAGCCAAACTGA
TGACAGAGAAGGCAGATGCAGAAGAGAATTTGGAGGATGTAATGGAGGAGGTTCGTAAAGTAAATGAGAG
CATCAAGTACAACCACCCACTGAGGAAGTGTGTAGACACAATACTTAAAAAGTGCCCTACAGATTATCAG
GAAAAGATGGGTAGGAATATGGATGACTATGAAGATTTTGACGAAAAGCGCAATACCTACCCAAGTGAAA
AAAGTTTGGTAAAATTGCATAAACAGGTGATTTATTCAGTTCAAAGGCACCGTCGGACTCAAGTGCAATG
GCAGATTCTTTTGGAACAGGCATTCTATCTAGAAGATGTAGCAAAAAATGAAACTAGCGCAACTCACCAG
TTTGTTCACACCTTTCAGTCACCTGAGCCAGAAAATCGATTTATCCAATATTTTTATAATCCTACTGTTG
AGTGGTACTGGGAATGCCTTTTGCGTCCATGGTTTCACAGGACCCTTGCTGTGGTTTTGTCTATCTTCTC
TGTGATTGTTGTGTGGTCAGAGTGTACCTTCTTTAGCACAACTCCTGTCTTATCCCTTTTTGCAGTATTC
ATACAGCTGGCAGAAAGAACATACAATTACATTTATATTGAGATTGCTTGCTTCCTTTCCATCTTCTTCT
TAAGCATCTGTGTTTACTCTACTGTGTTCAGGATCCGCGTGTTTAACTACTACTACCTGGCCTCACACCA
TCAGACCGATGCTTATAGCCTTCTGTTCAGTGGCATGTTATTTTGCCGTTTGACTCCTCCTTTATGTCTT
AACTTCTTGGGATTGACCCATATGGATTCATCCATCTCCCACCAGAATACCCAGCCAACTGCATATACAT
CTATCATGGGTTCCATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGGT
AGTAATTCTCTGCATCGCTACGTATTTTAGTTTGGGCACCCGTTGTTTGAATCTGCTTGGTTTCCAGCAG
TTCATGGGAGATAATGATATGACATCAGATCTAGTTGATGAAGGAAAAGAATTAATCAGACGAGAGAAAA
GAAAAAGGCAAAGACAAGAGGAAGGTGAAAATAGAAGAAGAGAGTGGAAAGAACGTTATGGACACAACAG
AGAGGATTCCACTCGGAACAGAAACGTCCATCCTGACCCCAAAGAGTCAAATTTCTCAGACACGACTACC
AACTGGTCATCCAAATACACCAGGGCTAATAACAGGACTGAAAGAGACCGAATAGAACTTCTCCAGGATG
CTGAGCCTCTGGATTTTAATGCAGAAACGTTTACGGATGAATCTCTGGAACCTGAGTCAGGAAGGTATCA
ACCTGGTGGGCGATATCTCTCCATGTCTTCCAGTATAATATTTGAAGATATCTAA

Translation (694 aa):
MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCRHAAAN
SSPPENTNVTGLDASVTPAPRQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSI
TGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPRLHLEWNQLQTIGIAAANTWGLFLLVLLLGYGLVEIP
RSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDVMEEVRKVNESIKYNHPLRKCVDTILKKCPTDYQ
EKMGRNMDDYEDFDEKRNTYPSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQ
FVHTFQSPEPENRFIQYFYNPTVEWYWECLLRPWFHRTLAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF
IQLAERTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCL
NFLGLTHMDSSISHQNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLNLLGFQQ
FMGDNDMTSDLVDEGKELIRREKRKRQRQEEGENRRREWKERYGHNREDSTRNRNVHPDPKESNFSDTTT
NWSSKYTRANNRTERDRIELLQDAEPLDFNAETFTDESLEPESGRYQPGGRYLSMSSSIIFEDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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