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Report for CCDS36570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36570.1 Public Mus musculus 12 Tmem179 23 108 98 CCDS HistoryNCBI Gene:104885Re-query CCDS DB by CCDS ID:36570.1Re-query CCDS DB by GeneID:104885See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066791.6 ENSMUSP00000068004.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066791.6Link to Ensembl Protein Viewer:ENSMUSP00000068004.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066791Re-query CCDS DB by Protein ID:ENSMUSP00000068004
Original member Current member NCBI NM_178915.3 NP_849246.2 Accepted alive Link to Nucleotide Sequence:NM_178915.3Link to Protein Sequence:NP_849246.2Re-query CCDS DB by Nucleotide ID:NM_178915Re-query CCDS DB by Protein ID:NP_849246Link to BLAST:NP_849246.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849246.2 233 Q8BHH9 233 100% 0 0

Chromosomal Locations for CCDS 36570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112501743 112501922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112503242 112503320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112504534 112504671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112510744 112511048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGCGCTCAACAATTTCCTCTTCGCGCAGTGCGTCTGTTACTTTCTGGCCTTCTTGTTCAGCTTCGTGG
TGGTGGTGCCATTGTCCGAGAACGGCCACGACTTTCGTGGCCGCTGCCTACTCTTTACCGAGGGTATGTG
GCTGAGTGCCAACCTGACGATGCAGGGGCGGGAGCGCTTCACTGTGCAGGAGTGGGGCCCACCGGCTGCC
TGCCGCTTCAGCCTGCTCGCCAGCCTCCTGTCACTGCTGCTGGCTGCTGCGCACGCATGGCGCACGCTCT
TCTTCCTCTGCAAGGGACACGAGGGCTCCTTCTTCTACGCCTTCCTGAACCTCCTGGTCAGTGCCTTTGT
GGTCTTCCTGGTCTTCATTGCCAGCACCATCGTGAGTGTGGGCTTCACCATGTGGTGTGACACCATCACT
GAGAAGGGCTCCACACCCCACAGCTGCGAGGAGTTCCAGGAAACGGACTTGGAGCTGAACGTCGACAACT
CTGCCTTCTACCATCAGTTTGCTATCGCCCAGTTTGGACTGTGGGCCTCCTGGCTGGCCTGGCTGGCGAT
CACCACTCTGGCTTTCCTGAAGGTTTATCACAACTACCGCCAGGAGGACCTGTTGGACAGCCTGGTTCAC
GAGAAGGAGCTTCTGCTAGCCAGGCCTACCTCCCGCACCTCCTTCCAGGGGGAGAAGAGTGCTGTCATCT
AG

Translation (233 aa):
MALNNFLFAQCVCYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTMQGRERFTVQEWGPPAA
CRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFYAFLNLLVSAFVVFLVFIASTIVSVGFTMWCDTIT
EKGSTPHSCEEFQETDLELNVDNSAFYHQFAIAQFGLWASWLAWLAITTLAFLKVYHNYRQEDLLDSLVH
EKELLLARPTSRTSFQGEKSAVI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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