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Report for CCDS36483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36483.1 Public Mus musculus 12 Erh 23 108 98 CCDS HistoryNCBI Gene:13877Re-query CCDS DB by CCDS ID:36483.1Re-query CCDS DB by GeneID:13877See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021559.13 ENSMUSP00000021559.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021559.13Link to Ensembl Protein Viewer:ENSMUSP00000021559.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021559Re-query CCDS DB by Protein ID:ENSMUSP00000021559
Original member NCBI NM_007951.4 NP_031977.1 Updated not alive Link to Nucleotide Sequence:NM_007951.4Link to Protein Sequence:NP_031977.1Re-query CCDS DB by Nucleotide ID:NM_007951Re-query CCDS DB by Protein ID:NP_031977
Current member NCBI NM_007951.5 NP_031977.1 Accepted alive Link to Nucleotide Sequence:NM_007951.5Link to Protein Sequence:NP_031977.1Re-query CCDS DB by Nucleotide ID:NM_007951Re-query CCDS DB by Protein ID:NP_031977Link to BLAST:NP_031977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031977.1 104 P84089 104 100% 0 0

Chromosomal Locations for CCDS 36483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80634425 80634527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80637490 80637610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80640957 80641044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80643764 80643766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGTCTCACACCATTTTGCTGGTACAGCCTACCAAGAGGCCAGAGGGCAGGACTTATGCTGACTATGAGT
CT
GTGAATGAGTGCATGGAAGGTGTTTGTAAAATGTATGAAGAACATCTGAAGAGGATGAATCCCAACAG
C
CCTTCCATCACATACGATATCAGCCAGTTGTTTGATTTTATTGACGATCTGGCAGACCTCAGCTGTCTG
GT
T
TACCGAGCTGATACACAGACATACCAGCCGTATAACAAAGACTGGATCAAAGAGAAGATCTACGTGC
TC
CTCCGTCGGCAGGCCCAACAGGCTGGGAAGTAA


Translation (104 aa):
MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCL
V
YRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser