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Report for CCDS3615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3615.1 Public Homo sapiens 4 C4orf36 24 110 108 CCDS HistoryNCBI Gene:132989Re-query CCDS DB by CCDS ID:3615.1Re-query CCDS DB by GeneID:132989See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3615.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295898.8 ENSP00000295898.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295898.8Link to Ensembl Protein Viewer:ENSP00000295898.3Re-query CCDS DB by Nucleotide ID:ENST00000295898Re-query CCDS DB by Protein ID:ENSP00000295898
Original member Current member EBI ENST00000473559.5 ENSP00000420949.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473559.5Link to Ensembl Protein Viewer:ENSP00000420949.1Re-query CCDS DB by Nucleotide ID:ENST00000473559Re-query CCDS DB by Protein ID:ENSP00000420949
Original member Current member NCBI NM_001369888.1 NP_001356817.1 Accepted alive Link to Nucleotide Sequence:NM_001369888.1Link to Protein Sequence:NP_001356817.1Re-query CCDS DB by Nucleotide ID:NM_001369888Re-query CCDS DB by Protein ID:NP_001356817Link to BLAST:NP_001356817.1
Original member Current member NCBI NM_001369889.1 NP_001356818.1 Accepted alive Link to Nucleotide Sequence:NM_001369889.1Link to Protein Sequence:NP_001356818.1Re-query CCDS DB by Nucleotide ID:NM_001369889Re-query CCDS DB by Protein ID:NP_001356818Link to BLAST:NP_001356818.1
Original member Current member NCBI NM_144645.4 NP_653246.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144645.4Link to Protein Sequence:NP_653246.2Re-query CCDS DB by Nucleotide ID:NM_144645Re-query CCDS DB by Protein ID:NP_653246Link to BLAST:NP_653246.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356817.1 117 Q96KX1 117 100% 0 0
NP_001356818.1 117 Q96KX1 117 100% 0 0
NP_653246.2 117 Q96KX1 117 100% 0 0

Chromosomal Locations for CCDS 3615.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 86887760 86887893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86888121 86888275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86891456 86891520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCGTATGGAGTGCCAAGAAAGAACACAGTGAAAACCATTTTGCGGGGCAGTTGTTATAATGTACAGG
AACCTTGGGATATTGCATTGCTTGCAAAGACCTGGTCCACAAACCTAGCCAATATCAAGTTGCCTTTCTT
GGAAGAAATTTCATTTGGTGGTTCTGTGCAGCTCACAAAATGTACCACCATTAAAGATGGACTGCTCCCT
TCTGCAGAATCTATCAAACTCGAAAGGGAGTATGAAGTGAAGCGTCTTTGTAAACTGAAGTGTCAAGAAA
ATACATCTAAGGAAATTCAGCTTCTCCTGAGGGAAAGGCCAGCCGGTTTGAGAAGACCTCTTCCATCTAA
ATGA

Translation (117 aa):
MAYGVPRKNTVKTILRGSCYNVQEPWDIALLAKTWSTNLANIKLPFLEEISFGGSVQLTKCTTIKDGLLP
SAESIKLEREYEVKRLCKLKCQENTSKEIQLLLRERPAGLRRPLPSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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