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Report for CCDS34996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34996.1 Public Homo sapiens 9 IFNA16 22 109 92 CCDS HistoryNCBI Gene:3449Re-query CCDS DB by CCDS ID:34996.1Re-query CCDS DB by GeneID:3449See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000380216.1 ENSP00000369564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380216.1Link to Ensembl Protein Viewer:ENSP00000369564.1Re-query CCDS DB by Nucleotide ID:ENST00000380216Re-query CCDS DB by Protein ID:ENSP00000369564
Original member Current member NCBI NM_002173.3 NP_002164.1 Accepted alive Link to Nucleotide Sequence:NM_002173.3Link to Protein Sequence:NP_002164.1Re-query CCDS DB by Nucleotide ID:NM_002173Re-query CCDS DB by Protein ID:NP_002164Link to BLAST:NP_002164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002164.1 189 P05015 189 100% 0 0

Chromosomal Locations for CCDS 34996.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21216736 21217305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCCCTGTCCTTTTCTTTACTGATGGCCGTGCTGGTGCTCAGCTACAAATCCATCTGTTCTCTGGGCT
GT
GATCTGCCTCAGACTCACAGCCTGGGTAATAGGAGGGCCTTGATACTCCTGGCACAAATGGGAAGAAT
C
TCTCATTTCTCCTGCCTGAAGGACAGATATGATTTCGGATTCCCCCAGGAGGTGTTTGATGGCAACCAG
TTC
CAGAAGGCTCAAGCCATCTCTGCCTTCCATGAGATGATCCAGCAGACCTTCAATCTCTTCAGCACAA
AG
GATTCATCTGCTGCTTGGGATGAGACCCTCCTAGACAAATTCTACATTGAACTTTTCCAGCAACTGAA
T
GACCTAGAAGCCTGTGTGACACAGGAGGTTGGGGTGGAAGAGATTGCCCTGATGAATGAGGACTCCATC
CTG
GCTGTGAGGAAATACTTTCAAAGAATCACTCTTTATCTGATGGGGAAGAAATACAGCCCTTGTGCCT
GG
GAGGTTGTCAGAGCAGAAATCATGAGATCCTTCTCTTTTTCAACAAACTTGCAAAAAGGATTAAGAAG
G
AAGGATTGA


Translation (189 aa):
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFGFPQEVFDGNQ
F
QKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSI
L
AVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTNLQKGLRRKD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser