NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics
Curation Guidelines

Collaborators
EBI
HGNC
MGI
NCBI
UCSC
WTSI

Contact Us
email CCDS

Genome Displays

Ensembl
Genome Browser
Map Viewer
VEGA

Related Resources
Gene
HomoloGene
RefSeq
UniGene


Report for CCDS32725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32725.1 Public Homo sapiens 17 USH1G 20 108 85 CCDS HistoryNCBI Gene:124590Re-query CCDS DB by CCDS ID:32725.1Re-query CCDS DB by GeneID:124590See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000614341 ENSP00000480279 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614341Link to Ensembl Protein Viewer:ENSP00000480279Re-query CCDS DB by Nucleotide ID:ENST00000614341Re-query CCDS DB by Protein ID:ENSP00000480279
Original member Current member EBI,WTSI OTTHUMT00000443676 OTTHUMP00000276762 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000443676Link to Vega Protein Viewer:OTTHUMP00000276762Re-query CCDS DB by Nucleotide ID:OTTHUMT00000443676Re-query CCDS DB by Protein ID:OTTHUMP00000276762
Original member Current member NCBI NM_173477.4 NP_775748.2 Accepted alive Link to Nucleotide Sequence:NM_173477.4Link to Protein Sequence:NP_775748.2Re-query CCDS DB by Nucleotide ID:NM_173477Re-query CCDS DB by Protein ID:NP_775748Link to BLink:NP_775748.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775748.2 461 Q495M9 461 100% 0 0

Chromosomal Locations for CCDS 32725.1

Assembly GRCh38.p7 (GCF_000001405.33)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 17Link to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74918073 74918076 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 74919454 74920671 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 74922910 74923073 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAACGACCAGTACCACCGGGCAGCCCGGGATGGCTACCTGGAGCTCCTCAAGGAGGCCACCCGAAAGG
AG
CTGAATGCCCCCGACGAGGATGGCATGACCCCCACTCTCTGGGCTGCCTACCATGGCAACCTCGAGTC
G
CTGCGTCTCATTGTGAGCCGCGGGGGTGACCCGGACAAGTGTGACATCTGGGGCAACACACCCCTGCAT
CTG
GCAGCTTCCAATGGCCACTTGCACTGCCTGTCCTTCCTGGTGTCCTTCGGAGCCAACATCTGGTGCC
TA
GACAACGACTACCACACGCCGCTGGACATGGCTGCCATGAAGGGCCACATGGAATGCGTGCGCTACCT
G
GACTCCATCGCGGCCAAGCAGAGCAGCCTCAACCCCAAGCTGGTGGGTAAGCTGAAGGACAAGGCCTTC
CGC
GAGGCGGAGCGGCGCATCCGCGAGTGCGCCAAGCTGCAGCGGAGGCACCACGAACGCATGGAGCGGC
GA
TACCGGCGCGAGCTGGCCGAGCGTTCCGACACCCTCAGCTTCTCCAGCCTCACGTCCAGCACCCTGAG
C
CGCCGGCTGCAGCATCTGGCGCTGGGCAGCCACCTGCCGTACTCTCAGGCCACGCTGCACGGCACGGCC
AGG
GGCAAGACCAAGATGCAGAAGAAGCTGGAGCGGCGCAAGCAGGGCGGCGAAGGCACCTTCAAGGTCT
CC
GAGGATGGGCGCAAGAGCGCCCGCTCGCTCTCGGGCCTGCAGCTGGGCAGCGACGTGATGTTCGTGCG
C
CAGGGCACCTACGCCAATCCCAAGGAGTGGGGCCGAGCCCCGCTCCGGGACATGTTCCTCTCGGACGAG
GAC
AGCGTCTCCCGTGCCACGCTGGCGGCCGAGCCTGCCCACTCGGAGGTCAGCACCGACTCAGGCCACG
AC
TCCCTGTTTACCCGCCCCGGCCTGGGCACCATGGTGTTCCGCAGAAATTACTTGAGCAGTGGGCTGCA
C
GGACTGGGCCGCGAGGATGGGGGTCTGGATGGGGTGGGAGCGCCGCGGGGTCGGCTGCAGAGCTCCCCC
AGC
CTGGACGATGACAGCCTGGGCAGTGCCAACAGCCTGCAGGACCGCAGCTGTGGGGAGGAGCTGCCCT
GG
GATGAGCTCGATTTAGGCTTGGACGAGGACCTGGAGCCCGAGACTAGCCCGCTGGAGACCTTCCTGGC
C
TCTCTGCACATGGAGGACTTTGCCGCCCTCCTGCGGCAGGAGAAGATCGACCTCGAGGCTTTGATGCTG
TGC
TCTGACCTCGACCTCCGCAGCATCAGCGTCCCACTGGGGCCCCGAAAGAAGATCTTGGGGGCCGTGA
GG
AGGCGGCGGCAGGCGATGGAGCGCCCGCCGGCCCTGGAGGACACAGAGCTATAA


Translation (461 aa):
MNDQYHRAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRGGDPDKCDIWGNTPLH
L
AASNGHLHCLSFLVSFGANIWCLDNDYHTPLDMAAMKGHMECVRYLDSIAAKQSSLNPKLVGKLKDKAF
R
EAERRIRECAKLQRRHHERMERRYRRELAERSDTLSFSSLTSSTLSRRLQHLALGSHLPYSQATLHGTA
R
GKTKMQKKLERRKQGGEGTFKVSEDGRKSARSLSGLQLGSDVMFVRQGTYANPKEWGRAPLRDMFLSDE
D
SVSRATLAAEPAHSEVSTDSGHDSLFTRPGLGTMVFRRNYLSSGLHGLGREDGGLDGVGAPRGRLQSSP
S
LDDDSLGSANSLQDRSCGEELPWDELDLGLDEDLEPETSPLETFLASLHMEDFAALLRQEKIDLEALML
C
SDLDLRSISVPLGPRKKILGAVRRRRQAMERPPALEDTE
L



Links Key
 Links to:   History report
  BLink report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser